Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02570 ATGAATAAAGGAATGGATTCAGTGATAGAACCAATGAGGAACGTTGAGAAGTGTTTAGATTCTCAGCTATGGCATGCTTGTGCTGGTGGGATGGTTCAAATGCCTTCTGTTAACTCTAAGGTAGTCTACTTTCCCCAGGGCCATGCCGAGCATGCTCAGGGGAATGTCGATTTTGGGAACGCTCGGATTCCTTCACTCATTCCTTGTAGGGTGTCTGCTACTAAATATATGGCAGATCTTGAAACGGATGAGATTTTTGCTAAGATAAGTTTGCTTCCATTGAGGAACAATGAATTCAATTTGGATGACGACGACGAACTTCTTGGACATGATGATATTAGGAATCAGGAGAAACCGTCTTCCTTTGCCAAGACATTGACGCAATCTGATGCAAACAACGGCGGAGGATTCTCTGTTCCTCGCTATTGTGCCGAGACGATCTTTCCTCCGTTGGATTACTCGGCAGAACCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGCGAGATTTGGAAGTTTAGGCATATATACAGAGGGACTCCCCGTCGCCATCTTTTGACGACAGGGTGGAGTAATTTTGTGAATCAGAAGAAGCTTGTTGCAGGGGACTCGATTGTTTTCCTCCGAGCTGAAACGGGTGATCTTTGTGTCGGAGTTAGGCGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCACCTGGGTGGAACCCTGCAAATTCAGGCTCTTCACTTATGGGGTATTCTGATTTCATGAGGGAAAATGAAGGTAGAATGGCAAGACGACACTCAAACGGGAACCTTAATGGAAGAGTGAAGGTCGAATCCGTCATCGAAGCTGCAACGCTTGCTGCCAGTGGAAAGCGCTTCGAGATTGTGTACTACCCATGTGCTGGCACTCCAGAATTTGTTGTTAGGGCCTCTACTGTAAGATCTGCTATGCAAATTCATTGGTATTCTGCTATGAGATTTAAGATGCCTTTTGAAACCGAGGATTCGTCTCGGATAAGCTGGTTTATGGGAACGATATCTTCGATCCAGGTTGCCGATCCTGTTCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGTCATGGGATGAACCAGATTTACTACAAAATGTGAAGAGTGTTAACCCCTGGTTGGTTGAAGTGGTAGTAAACATGCCAGCAATCCATGTCTCCCCCTTCTTGCCACCAAGAAAGAAGCCACGTTATCCGCTTCCGGCCGAAACTGCTGTATTTGGTCACCTTCCGATGCCATCGTTTTCGACTAATTTCTTCGAAGCAACCAACCCGTTTCAAAGCATTACGGCGAGCAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCCAACCTCCAAATCAGCATACCGCCTTTGGGACAGTTTCCCGCCGGTCTTAAGCACCTTGAAGGTGCCACTCCAATCCCTGTCGTCCGTGGCGAGGATAGCGTCGGAGGCACGAAAAGCCCTGATAATCATTCTCATTGGCTAACAGTGGGAAATCATATCCAAAGCACAAAAGAAAGCAAAGAAACAAAACCAGATCATATCATATTGTTTGGCCAACTCATTCTTCCTAATCAACAGAGTTCCAACAGCTCCTCTGGAGATACGACGAACGTATCCGATGCAAATCTAGAGAAAGCGTCGAATCTTTCTGATGGTTCTGGCTTGTCATCACAGCAGAACGGTTCACTGGACAATTCATCAGATGGAGGGTCTACGTCATACAACGGTCCGAACAAAACTGGTCTAAGCTTGGACATTGGTCATTGCGAGGTGTTTATGGAGTTGGAGAATGTCAGTCACACACTCGACCTGTCGGTCCTTGGATCGTACGAAGAATTGTATAGAAAGCTCGGCAACATGTTTAGCGTAGGACGGTCAGAGATGCTGAATTCTGTTCTTTATCAGGATGCTCTTGGTGCTACAAAGCAAGCTGGAGATGAGCCTTTCAGCAAGTTTATGAGGACAGCACGAAGACTAACCATACTCGCAAATTCTCGAAGCAGATTCTCGAAGAAGCGACAATATTAG 2067 46.44 MNKGMDSVIEPMRNVEKCLDSQLWHACAGGMVQMPSVNSKVVYFPQGHAEHAQGNVDFGNARIPSLIPCRVSATKYMADLETDEIFAKISLLPLRNNEFNLDDDDELLGHDDIRNQEKPSSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCVGVRRAKRGIGCGIDYSPGWNPANSGSSLMGYSDFMRENEGRMARRHSNGNLNGRVKVESVIEAATLAASGKRFEIVYYPCAGTPEFVVRASTVRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISSIQVADPVRWPDSPWRMLQVSWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFLPPRKKPRYPLPAETAVFGHLPMPSFSTNFFEATNPFQSITASNIPAGIQGARHTQFGLSSSNLQISIPPLGQFPAGLKHLEGATPIPVVRGEDSVGGTKSPDNHSHWLTVGNHIQSTKESKETKPDHIILFGQLILPNQQSSNSSSGDTTNVSDANLEKASNLSDGSGLSSQQNGSLDNSSDGGSTSYNGPNKTGLSLDIGHCEVFMELENVSHTLDLSVLGSYEELYRKLGNMFSVGRSEMLNSVLYQDALGATKQAGDEPFSKFMRTARRLTILANSRSRFSKKRQY 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17655759 17659094 + CmaCh04G025700.1 Cma04g02570 293651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02570 688 CDD B3_DNA 121 222 IPR003340 GO:0003677
Cma04g02570 688 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma04g02570 688 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Cma04g02570 688 Gene3D - 120 224 IPR015300 -
Cma04g02570 688 SUPERFAMILY DNA-binding pseudobarrel domain 109 224 IPR015300 -
Cma04g02570 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 676 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma04g02570 688 Gene3D - 599 682 - -
Cma04g02570 688 Gene3D - 320 391 - -
Cma04g02570 688 SMART B3_2 122 224 IPR003340 GO:0003677
Cma04g02570 688 MobiDBLite consensus disorder prediction 558 589 - -
Cma04g02570 688 MobiDBLite consensus disorder prediction 488 507 - -
Cma04g02570 688 PANTHER AUXIN RESPONSE FACTOR 16 11 676 - -
Cma04g02570 688 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02570 Cma15g00461 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00897 Cma-Chr2:5336352 Cma04g02570 Cma-Chr4:17655759 0 dispersed
Cma03g01236 Cma-Chr3:8185388 Cma04g02570 Cma-Chr4:17655759 3.07E-169 dispersed
Cma04g02570 Cma-Chr4:17655759 Cma12g00140 Cma-Chr12:610877 4.70E-106 dispersed
Cma15g00461 Cma-Chr15:2049668 Cma04g02570 Cma-Chr4:17655759 0 wgd
Cma20g00489 Cma-Chr20:2380923 Cma04g02570 Cma-Chr4:17655759 0 wgd
Cma04g02570 Cma-Chr4:17655759 Cma07g00923 Cma-Chr7:4422962 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34972 PF02362 B3 4.70E-21 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02570 - - cmo:103496426 1112.06