Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02577 ATGGCAATGGCCAACGACAAAGGTACGGAGCATAGCAATGGCAAGTGGGTGGGCGGTGTGCCCAACTCAGCCGGAGCCGCTGAAACTCACTGCTCCTTTTCTCTTTTCATCCTTCAATTTCCTCTCATTAAATGCAGCTCTTCGCTCCCCAACTTTGCACCATATTCAAATCAAAATCCATCGCCGGAAATTGATTTTCTCTCTCCTAGGGCTTCGATTTTCGATTTCTCTGTCATTATGGCGAAGAATGCAGCGGAACGCGGCTCGTTCTCGGCGAAGGACTACCACGATCCGCCACCGGCGCCTCTCATCGATGCCGTGGAGATTACGAAATGGTCGTTTTACAGAGCTCTTATTGCGGAGTTCATAGCCACTCTGCTTTTCCTGTACGTCACTGTGTTGACGGTGATCGGCTACAAATCGCAGACGGATCATATCGGCAACAAGAACGTTGATCCTTGCGGTGGCGTCGGGATTCTTGGCATTGCCTGGGCGTTTGGTGGAATGATCTTCGTTCTTGTTTACTGTACCGCTGGAATTTCAGGTGGGCACATAAATCCAGCAGTGACATTTGGGCTTTTGTTGGCCCGAAAGGTGTCACTTGTCCGGGCCGTGATGTACATGGTGGCCCAATGCTTAGGGGCCATTTGCGGAGTTGGGCTCGTGAAGTCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGTGGGGCAAATGGGCTCGCCGACGGCTACACCGTCGGCGTTGGACTGGCGGCGGAGATCGTGGGGACGTTTGTGTTGGTGTATACAGTCTTCTCTGCTACAGATCCCAAACGAAGCGCAAGAGATTCCCACGTTCCTGTTTTGGCGCCACTCCCAATTGGATTTGCAGTGTTCATAGTTCACCTGGCCACCATTCCAGTCACTGGCACTGGAATCAACCCAGCAAGGAGCTTGGGATCTGCTGTTATTTTCAACCATCAAAACACTTGGAATAATCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGCGAGCAGGTGCTGTAAAGGCTCTTGGGTCATTTAGAAGCAACCCAAATGTGTGA 1101 51.23 MAMANDKGTEHSNGKWVGGVPNSAGAAETHCSFSLFILQFPLIKCSSSLPNFAPYSNQNPSPEIDFLSPRASIFDFSVIMAKNAAERGSFSAKDYHDPPPAPLIDAVEITKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHIGNKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAICGVGLVKSFQKAHFQKYGGGANGLADGYTVGVGLAAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPVTGTGINPARSLGSAVIFNHQNTWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17684866 17688147 + CmaCh04G025770.1 Cma04g02577 293658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02577 366 CDD MIP 116 348 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 ProSitePatterns MIP family signature. 184 192 IPR022357 -
Cma04g02577 366 Gene3D Glycerol uptake facilitator protein. 101 366 IPR023271 -
Cma04g02577 366 PANTHER AQUAPORIN PIP2-1 84 363 - -
Cma04g02577 366 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 84 363 IPR034294 -
Cma04g02577 366 PRINTS Major intrinsic protein family signature 252 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 PRINTS Major intrinsic protein family signature 328 348 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 PRINTS Major intrinsic protein family signature 203 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 PRINTS Major intrinsic protein family signature 166 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 PRINTS Major intrinsic protein family signature 288 310 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 TIGRFAM MIP: MIP family channel proteins 120 345 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 Pfam Major intrinsic protein 108 345 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g02577 366 SUPERFAMILY Aquaporin-like 108 350 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01369 Cma04g02577 CCT
Cma04g01369 Cma04g02577 ECH
Cma04g02577 Cma04g01369 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02577 Cma-Chr4:17684866 Cma07g00928 Cma-Chr7:4452094 1.24E-170 dispersed
Cma15g00457 Cma-Chr15:2035913 Cma04g02577 Cma-Chr4:17684866 6.20E-10 wgd
Cma18g00891 Cma-Chr18:7695873 Cma04g02577 Cma-Chr4:17684866 1.99E-152 wgd
Cma20g00484 Cma-Chr20:2339049 Cma04g02577 Cma-Chr4:17684866 4.77E-165 wgd
Cma04g01369 Cma-Chr4:7014589 Cma04g02577 Cma-Chr4:17684866 4.01E-171 wgd
Cma04g02577 Cma-Chr4:17684866 Cma07g00926 Cma-Chr7:4445014 8.48E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02577 K09872 - twl:119980357 500.745