Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g02600 | ATGGGGAAGAAGGGAGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCAGAATCAAAGGATAAGAAAGATCAGAAAGCTAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACGGTGGCATCTGGGGAGCCAGCGCCATTGGAAGTGTCTATTCTACCTATCGAGGAAGTGAAACTAGCTAATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCGGAGGTGGCGGTTGCAGCGGCTCAGGCCGCCGCAGAGGTCGTTAGGCTCACCACCCGCCCTTGGTACTCCGGGAAATCTAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCTAGGAGGGCCCTGCGAGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATACAAGGCCAATCTGTTAAAAGGCAAGCAACATCCACATTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGCTAGAAGAATTAGATTGTCAGAGGAGAATCAGGCTCTTCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGGTTAACTGTTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCTTATGCTTACTCTCATCAGAAGTTCTGGAATAATTCTTCAAAATCTGCAAATCCTACGTTCATGGACCCCAACAATCCCCACTGGGGATGGAGTTGGTTAGAGCGATGGATGGCTGCTCGTCCATGGGAGACCAAAAGCGCCGTCGATTACCACGATCGTGGCTCTGTCAAGAGCGCGATCAGCCATGCAACGTCAATTGGAGACATTGCAAAATCTTACGCCCGTCGTGATTTCAATCTTGACATCAAGCCTTTTCCAAGGACTCCGACGAGCCATAATACGAGCCGTGCACCAAGTCGCCAATCGCCGGCGACTCCGACTAAGGCGCAATCGTCGCTATCTGCAGGAAGAAAATTGAAGTCAGCAAGTCCAAGAGGATTAGGCTGGGGCGGAGATGAAGATTCCAGAAGCGGATTGAGCGTCAAATCGGAGCGGTTCCGGCGACGTAGCATCGCCGGATCATCGGTGAGGGACGACGAAAGCTTCACTAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCCCGCTTGTCGAGTCCGATGGGAATAGAGAAGACGACAGCAACTCCGGAGAAAGAATCGGTGAGTGGCGGCGCAAAGAAGCGGCTCTCATTCACCGCCTCGACGGCGACGGTGAGGAGACACTCTGGTCCACCGAAAATAGACGCTACTCCGATCAAGAATGTTGCAGCGACAGAGAGAGATTTTACCGGCGAGAGCAGATAG | 1464 | 50.61 | MGKKGGWFSAVKKAFAPESKDKKDQKANKSKKRWFGKPKKLETVASGEPAPLEVSILPIEEVKLANAENEQSKHAYSVAIATAVAAEVAVAAAQAAAEVVRLTTRPWYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATSTLRCMQTLARVQSQIRARRIRLSEENQALQRQLQQKHERELERLTVSANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAYSHQKFWNNSSKSANPTFMDPNNPHWGWSWLERWMAARPWETKSAVDYHDRGSVKSAISHATSIGDIAKSYARRDFNLDIKPFPRTPTSHNTSRAPSRQSPATPTKAQSSLSAGRKLKSASPRGLGWGGDEDSRSGLSVKSERFRRRSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGIEKTTATPEKESVSGGAKKRLSFTASTATVRRHSGPPKIDATPIKNVAATERDFTGESR | 487 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 17780558 | 17784236 | + | CmaCh04G026000.1 | Cma04g02600 | 293681 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g02600 | 487 | MobiDBLite | consensus disorder prediction | 17 | 40 | - | - | |
| Cma04g02600 | 487 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 1 | 475 | - | - | |
| Cma04g02600 | 487 | SMART | iq_5 | 113 | 135 | IPR000048 | GO:0005515 | |
| Cma04g02600 | 487 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 475 | - | - | |
| Cma04g02600 | 487 | MobiDBLite | consensus disorder prediction | 325 | 357 | - | - | |
| Cma04g02600 | 487 | ProSiteProfiles | IQ motif profile. | 114 | 142 | IPR000048 | GO:0005515 | |
| Cma04g02600 | 487 | Coils | Coil | 170 | 197 | - | - | |
| Cma04g02600 | 487 | MobiDBLite | consensus disorder prediction | 376 | 394 | - | - | |
| Cma04g02600 | 487 | MobiDBLite | consensus disorder prediction | 395 | 411 | - | - | |
| Cma04g02600 | 487 | Pfam | IQ calmodulin-binding motif | 117 | 135 | IPR000048 | GO:0005515 | |
| Cma04g02600 | 487 | Gene3D | iswi atpase | 111 | 149 | - | - | |
| Cma04g02600 | 487 | MobiDBLite | consensus disorder prediction | 319 | 487 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g02600 | Cma18g00883 | CCT | |
| Cma04g01355 | Cma04g02600 | CCT | |
| Cma04g02600 | Cma18g00883 | ECH | |
| Cma04g02600 | Cma04g01355 | ECH | |
| Cma04g01355 | Cma04g02600 | ECH | |
| Cma04g02600 | Cma15g00434 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g01253 | Cma-Chr3:8249643 | Cma04g02600 | Cma-Chr4:17780558 | 3.26E-140 | dispersed | |
| Cma04g02202 | Cma-Chr4:15382313 | Cma04g02600 | Cma-Chr4:17780558 | 3.52E-37 | dispersed | |
| Cma04g02600 | Cma-Chr4:17780558 | Cma06g00359 | Cma-Chr6:1669757 | 5.55E-09 | dispersed | |
| Cma06g00140 | Cma-Chr6:715795 | Cma04g02600 | Cma-Chr4:17780558 | 1.78E-18 | dispersed | |
| Cma08g00183 | Cma-Chr8:1030926 | Cma04g02600 | Cma-Chr4:17780558 | 2.95E-38 | dispersed | |
| Cma11g00912 | Cma-Chr11:4724208 | Cma04g02600 | Cma-Chr4:17780558 | 1.58E-51 | dispersed | |
| Cma14g01431 | Cma-Chr14:10987404 | Cma04g02600 | Cma-Chr4:17780558 | 9.65E-28 | dispersed | |
| Cma15g00828 | Cma-Chr15:4176891 | Cma04g02600 | Cma-Chr4:17780558 | 3.64E-39 | dispersed | |
| Cma16g00043 | Cma-Chr16:188489 | Cma04g02600 | Cma-Chr4:17780558 | 3.24E-38 | dispersed | |
| Cma16g00415 | Cma-Chr16:2072511 | Cma04g02600 | Cma-Chr4:17780558 | 1.23E-32 | dispersed | |
| Cma19g00888 | Cma-Chr19:8140995 | Cma04g02600 | Cma-Chr4:17780558 | 4.62E-17 | dispersed | |
| Cma06g00946 | Cma-Chr6:6396619 | Cma04g02600 | Cma-Chr4:17780558 | 8.98E-49 | transposed | |
| Cma17g00507 | Cma-Chr17:3326497 | Cma04g02600 | Cma-Chr4:17780558 | 1.87E-45 | transposed | |
| Cma15g00434 | Cma-Chr15:1943695 | Cma04g02600 | Cma-Chr4:17780558 | 0 | wgd | |
| Cma18g00883 | Cma-Chr18:7634836 | Cma04g02600 | Cma-Chr4:17780558 | 4.87E-101 | wgd | |
| Cma04g01355 | Cma-Chr4:6912495 | Cma04g02600 | Cma-Chr4:17780558 | 5.28E-111 | wgd | |
| Cma04g02600 | Cma-Chr4:17780558 | Cma07g00937 | Cma-Chr7:4504725 | 9.43E-127 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g02600 | - | - | cmax:111487231 | 908.672 |