Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02600 ATGGGGAAGAAGGGAGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCAGAATCAAAGGATAAGAAAGATCAGAAAGCTAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACGGTGGCATCTGGGGAGCCAGCGCCATTGGAAGTGTCTATTCTACCTATCGAGGAAGTGAAACTAGCTAATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCGGAGGTGGCGGTTGCAGCGGCTCAGGCCGCCGCAGAGGTCGTTAGGCTCACCACCCGCCCTTGGTACTCCGGGAAATCTAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCTAGGAGGGCCCTGCGAGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATACAAGGCCAATCTGTTAAAAGGCAAGCAACATCCACATTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGCTAGAAGAATTAGATTGTCAGAGGAGAATCAGGCTCTTCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGGTTAACTGTTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCTTATGCTTACTCTCATCAGAAGTTCTGGAATAATTCTTCAAAATCTGCAAATCCTACGTTCATGGACCCCAACAATCCCCACTGGGGATGGAGTTGGTTAGAGCGATGGATGGCTGCTCGTCCATGGGAGACCAAAAGCGCCGTCGATTACCACGATCGTGGCTCTGTCAAGAGCGCGATCAGCCATGCAACGTCAATTGGAGACATTGCAAAATCTTACGCCCGTCGTGATTTCAATCTTGACATCAAGCCTTTTCCAAGGACTCCGACGAGCCATAATACGAGCCGTGCACCAAGTCGCCAATCGCCGGCGACTCCGACTAAGGCGCAATCGTCGCTATCTGCAGGAAGAAAATTGAAGTCAGCAAGTCCAAGAGGATTAGGCTGGGGCGGAGATGAAGATTCCAGAAGCGGATTGAGCGTCAAATCGGAGCGGTTCCGGCGACGTAGCATCGCCGGATCATCGGTGAGGGACGACGAAAGCTTCACTAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCTAGGGCTAGGTCCCGCTTGTCGAGTCCGATGGGAATAGAGAAGACGACAGCAACTCCGGAGAAAGAATCGGTGAGTGGCGGCGCAAAGAAGCGGCTCTCATTCACCGCCTCGACGGCGACGGTGAGGAGACACTCTGGTCCACCGAAAATAGACGCTACTCCGATCAAGAATGTTGCAGCGACAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1464 50.61 MGKKGGWFSAVKKAFAPESKDKKDQKANKSKKRWFGKPKKLETVASGEPAPLEVSILPIEEVKLANAENEQSKHAYSVAIATAVAAEVAVAAAQAAAEVVRLTTRPWYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATSTLRCMQTLARVQSQIRARRIRLSEENQALQRQLQQKHERELERLTVSANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAYSHQKFWNNSSKSANPTFMDPNNPHWGWSWLERWMAARPWETKSAVDYHDRGSVKSAISHATSIGDIAKSYARRDFNLDIKPFPRTPTSHNTSRAPSRQSPATPTKAQSSLSAGRKLKSASPRGLGWGGDEDSRSGLSVKSERFRRRSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGIEKTTATPEKESVSGGAKKRLSFTASTATVRRHSGPPKIDATPIKNVAATERDFTGESR 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17780558 17784236 + CmaCh04G026000.1 Cma04g02600 293681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02600 487 MobiDBLite consensus disorder prediction 17 40 - -
Cma04g02600 487 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 475 - -
Cma04g02600 487 SMART iq_5 113 135 IPR000048 GO:0005515
Cma04g02600 487 PANTHER IQ-DOMAIN 5-RELATED 1 475 - -
Cma04g02600 487 MobiDBLite consensus disorder prediction 325 357 - -
Cma04g02600 487 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Cma04g02600 487 Coils Coil 170 197 - -
Cma04g02600 487 MobiDBLite consensus disorder prediction 376 394 - -
Cma04g02600 487 MobiDBLite consensus disorder prediction 395 411 - -
Cma04g02600 487 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Cma04g02600 487 Gene3D iswi atpase 111 149 - -
Cma04g02600 487 MobiDBLite consensus disorder prediction 319 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02600 - - - cmax:111487231 908.672
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02600 Cma18g00883 CCT
Cma04g01355 Cma04g02600 CCT
Cma04g02600 Cma18g00883 ECH
Cma04g02600 Cma04g01355 ECH
Cma04g01355 Cma04g02600 ECH
Cma04g02600 Cma15g00434 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01253 Cma-Chr3:8249643 Cma04g02600 Cma-Chr4:17780558 3.26E-140 dispersed
Cma04g02202 Cma-Chr4:15382313 Cma04g02600 Cma-Chr4:17780558 3.52E-37 dispersed
Cma04g02600 Cma-Chr4:17780558 Cma06g00359 Cma-Chr6:1669757 5.55E-09 dispersed
Cma06g00140 Cma-Chr6:715795 Cma04g02600 Cma-Chr4:17780558 1.78E-18 dispersed
Cma08g00183 Cma-Chr8:1030926 Cma04g02600 Cma-Chr4:17780558 2.95E-38 dispersed
Cma11g00912 Cma-Chr11:4724208 Cma04g02600 Cma-Chr4:17780558 1.58E-51 dispersed
Cma14g01431 Cma-Chr14:10987404 Cma04g02600 Cma-Chr4:17780558 9.65E-28 dispersed
Cma15g00828 Cma-Chr15:4176891 Cma04g02600 Cma-Chr4:17780558 3.64E-39 dispersed
Cma16g00043 Cma-Chr16:188489 Cma04g02600 Cma-Chr4:17780558 3.24E-38 dispersed
Cma16g00415 Cma-Chr16:2072511 Cma04g02600 Cma-Chr4:17780558 1.23E-32 dispersed
Cma19g00888 Cma-Chr19:8140995 Cma04g02600 Cma-Chr4:17780558 4.62E-17 dispersed
Cma06g00946 Cma-Chr6:6396619 Cma04g02600 Cma-Chr4:17780558 8.98E-49 transposed
Cma17g00507 Cma-Chr17:3326497 Cma04g02600 Cma-Chr4:17780558 1.87E-45 transposed
Cma15g00434 Cma-Chr15:1943695 Cma04g02600 Cma-Chr4:17780558 0 wgd
Cma18g00883 Cma-Chr18:7634836 Cma04g02600 Cma-Chr4:17780558 4.87E-101 wgd
Cma04g01355 Cma-Chr4:6912495 Cma04g02600 Cma-Chr4:17780558 5.28E-111 wgd
Cma04g02600 Cma-Chr4:17780558 Cma07g00937 Cma-Chr7:4504725 9.43E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02600 Cma_Chr04 FPKM 8.566535 10.099331 3.828232 4.527745 30.101679 27.329479 24.838299 1.231624 1.166891 1.473149