Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02608 ATGGAGATTAGCTACGCATCACCTAGCGCGTCTAGTCTTGCTTCCTCTAATTCTGCCCTTTCATCCATGCCTTCCTCCACCCGACCGGTCAAGGTCATTCCCTTGCAGCATCCTAGTACGACGTCGTCCTCGCCGGCTGGTGGTTATTCCGCTGGCGTTCTGGTGAAAAAATGGACGGGGAAGGTTAAGCAGATGACTTGGATTAACTGGATGGAGCTTCTGCTACCGTGCTCGCGTTGGATTAGAACGTATAAATGGCGGGAGTATTTACAGAGCGATCTCTTGTCCGGGATTACCATTGGCATCATGCTCGTTCCGCAGGCAATGTCTTATGCGAAATTAGCCGGGCTTCAACCAATATATGGACTTTATTCTGGTTTTCTCCCTTTGTTCGTCTATGCATTTTTTGGTTCTTCTCGTCAGCTTGCTGTTGGTCCAGTAGCATTGGTTTCTCTCCTGGTTTCTAATGTCCTGGGTGGAATTGTCAATTCATCTGAGGAACTATATACTGAACTTGCGATATTATTGGCACTCATGGTTGGAGTATTGGAATGTGTGATGGGGCTCTTGAGTCACTCTGTAATCTCTGGCTTTACTACAGCTTCTGCCATTGTGATTGGATTATCCCAAGTGAAATATTTTCTGGGGTATGATGTATCAAGAAGTAGCAAAATTGTGCCTCTAATTGAAAGCATAATAGCTGGAGCAGACGGGGGAAAAACAAGGAAGCACTTACGGTTTCTCAGAGTTGCTGGTCCCCTTACAGCAGTTGTTATGGGTACAACATTGGCGAAAGTATTGAATCTTCCATCCATTTCATTGGTTGGAGACATTCCCCAAGGCCTTCCGAAGTTTTCCGTTCCTAAAAGTTTTGAGCATGTGAAGTCGTTGATTCCAACTGCCTTTCTGATCACAGGAGTAGCTATATTGGAATCTGTTGGGATTGCGAAAGCATTAGCAGCCAAGAACGGGTACGAGTTAGATTCAAATCAGGAGTTATTTGGTCTTGGAGTATCGAATGTTGTTGGCTCATTCTTTTCAGCATATCCCACAACAGGTTCTTTCTCAAGATCAGCTGTGAACCACGAAAGTGGAGCAAAAACAAGCTTATCTCAGATTGTTACAGGAATCGTTATGGGTGGTGCCCTTCTTTTCTTGACACCATTGTTTGAGCACATACCTCAGTGTGCTTTGGCCGCCATTGTGATTTCCGCTGTAATAACTTTGGTGGATTACGACGAGGCTATTTTTTTGTGGCGTATAAATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTACTACGTTGTTCCTTGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTGGCCTTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTATTGGGGCGTCTTCCTGGCACAACTGTGTACAGAAATATTCAACAGTATCCTGAGGCATATACTTACAATGGAATTGTGATTGTTCGGATTGATGCACCAATTTATTTTGCAAACACGAGTTACATCAGTGACAGGCTACGTGAATATGAAGTTGAAGTGGACCGATCTACTGGTCGTGGACCAGATGTTGAAAGAGTCTATTTCGTGGTTATAGAGATGGCACCTGTTACTTACATAGATTCAAGTGCTGTCCAGACTCTAAAAGATTTGTATCAAGAGTACAAACTACGTGATATTCAGATTGCCATTTCCAATCCGAATCGAGATGTTCTACTTACATTTTCAAGATCTGGCGTTGTTGAGCTTATCGGGAAGGAGTGGTTTTTTGTTAGAGTTCATGATGCAGTCCAAGTTTGTCTTCAGCATGTGGAGAGCCTAAAGGAAACAACCATGAGATCAGTTTCTTCTCCAAATGATGCATCGACCTATATCCAAAGATCTTCAGCACCTAGCAATGGCAGTACCGAAGTTTCTCCATCGAAAACAGAAAAACGAGATTATCTCGAGCATCCATTCGAAGGTACTGGTCTTAGAAGAAGTCGCTCACTGTCCGCAGCATCGTTGCTTGACGGTGGGAAGCAGAAGAGTTCCTCTGGGTTAAAAGATGAAAATGGAGCTGCATATAGTAACTTAATTGGCACTTCAGATCAGCAGTGTGAACGTTCAAATCGCCGTCAAATATCACCATTAAGAAGACAGTGTAGAGAAAAGCAATTTGAGATGATTTATAACGATTATGGAGCTGTAACAGAGAGGCCATGTTCTGCTGTGTCGTCCCGAAGCTATTGTGATTCTTCAGGAAATTCTTCCGCTTCATCTGGTAATGTCTCGAGCAAAATCTTGGATCGGTATATTGATAATGGAGAGCAACAGGTAGAATCAAGCAAACCCCAACACTGTATTCCTCCCAGAAATTACCCTGGACATGGTAGTCGGAGGCGGCCCCCACGTGGTCGAAGTATAGCACCTACTTCGCCGAAACATGTTATTAATGAAAAGTCAATGAGTCGTCCATCTGAAGAATTCCCAAGTTCAAATTATCACCACTTTCCTGCAAAGTATGGTGAAAATGGATTAGGACATGAATCTCCAAGGACCATAGCGAAGAATCTAATCGAGATACTCTCCCAGTCTCATGGGATTCCTAAAACAAGTCCAAAGGGTTTCGACAATAGTATGCCAATCACTGTAGGCGATATACTCGATAGGTGCGCAAGTGAAGAGTATGATTCCAATGTGGATGTCATACCCCAGAAATTCTATTCAGTTCATGAACCTTCAGAAGCGATTAATAGAAATAAGATGGAGAATTCTGGTTTAGATAGACAGAACTTAATAGATCATAGTGAAGTGTTGAACCTTGTTGAAACCAAAGAGGAAATGGATGGGGAACTCAAGAGGAGAATCAAGGTGGCAAAGGAGAGAGTCATGCTTTTCAGAGAAGAACGAGACCGGGAAAGCTTTCTTCAACAGAGGACCGGAGTTTCGGGTTTGGTTCAGACAATTAGACATCTTTCTGAGGAGAAAACGAGCTTAGCACTTGAGGTTCTAAGTCTTCTAGAGTCCCAAATTATTGAAAGGGCTTCTGCAAAGGAAGAGCTGAGACTGGCAAAGGAAACATTGGATTCTCAAACTAAGAAACTGGATAGAGAAAAGATTGAATTGCAGTCAGAACTGGAGGTAGAGCTCGACAGAAGGTCGAACGACTGGTCGTTAAAACTAGAAAAATACCAGTTGGAAGAACAGAGGCTTCGTGAAAGAGTTCGGGAGCTAGCAGAGCAGAATGTATCTCTACAGAGGGAAGTTTCTCTTATCAATGAGAGGGACACAGAGAATCGAAGCCTAATATCAAATTCGGAGCAAAAAGTTAAGGAATTAACCATAATGATGGATAAATTTCGGGACGAAAACCAAGTTTTGATGCAGAATCTCTCCGACTTGCAAGATAAGTACGAAACTGCTAAAGAAGATAGAGAATCCTTTAAGAGAAATTTTGAGGAGAAGGATAAAGAATGCAAGGAGTTGTATAAAGCAACAACAAGATTAACGAGGACCTGCTGTGACCAGCAGAAAACAATCGATGGATTGCAGGAAAGGTTTACTCAAGAATTAGGGAAGAACACAGAACTTGAAAAGTTAGATAAGCGAGTCGTAAAATTGCAGATGGAGCAAATAAGGTTAACTGAAGTAGAACTGGGATTAAGAAGGGAATTAGAATCTTGCAGGTTCGAAATTGATTCCCTTCGGCACGAGAACATAAGCATCTTCAATCGCTTAAAGAATAGTGAGAAAGATAATGGTGCCTTAACCATCAAGCTGGATGAGGAAATGTTAGCTCGCGTTGATTGTCTACAACATCAAGGGCTAACATTGTTAAACGAAAGCTCCCAGTTATGTGCAGAATTACTTGAATTCATCAAAGGGAAAGTTCATTACCTTTCAGAAAGTATACAGGGGATGGAGGCTGTGAAGAACAATCTGGATGGGCTATACTTCATTGAATCTGAGATGAAAGTTCAAGGATTAAAGCGTGGAACCGAAAGCTTAAAACGGAGTTTATCGATAGTATCTTCGTTGTTGCATAAGAAAACCAATGCAGATGGGTTAATGCATTTACATGGTGATGCTTCAGAGCATGTTTTAAACTCCGAGCTCAAAGCTGAACGGTTGTTAACGAGTCTGGTGAAAGAGAAGCTTTACTCTAAGGAGCTGGAAATCGAGCAGCTGCAAGCTGAAATTGCAACGGCAGCTAGAGCAAACCATATTCTTAGATGTGAAGTGCAAAATGCACTAGACAACTTATCCTGCATTACACACAAGCTAAAGGATCTTGAACTCCAGATTCTGAAAAGGGATAAGAATGTGAACCAGCTACAAAATGACCTTGAAGAATCTACCACAGAATTGGCTATCATTAGGGGAACCGTGCCAAAGATTTCTGAGGAGAGAGATATTATGTGGGATCAAGTGAAACAATACAGTGAAGAGAATATGCTACTTAACTCGGAGGTTAATCTATTGAAAAAGAAGATAGAATCCTTGGAGGAAGACATACTTCTCAGGGAAGGTCAGATCACGATTCTTAAAGACTCCATGAGAAACAAATCTTTTGACCTTCTGGGTAATATTGAATCTACAGACGAGTTTCTTGTACGATGA 4620 41.97 MEISYASPSASSLASSNSALSSMPSSTRPVKVIPLQHPSTTSSSPAGGYSAGVLVKKWTGKVKQMTWINWMELLLPCSRWIRTYKWREYLQSDLLSGITIGIMLVPQAMSYAKLAGLQPIYGLYSGFLPLFVYAFFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGVLECVMGLLSHSVISGFTTASAIVIGLSQVKYFLGYDVSRSSKIVPLIESIIAGADGGKTRKHLRFLRVAGPLTAVVMGTTLAKVLNLPSISLVGDIPQGLPKFSVPKSFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIVMGGALLFLTPLFEHIPQCALAAIVISAVITLVDYDEAIFLWRINKKDFLLWVITAITTLFLGIEIGVLIGVGVSLAFVIHESANPHMAVLGRLPGTTVYRNIQQYPEAYTYNGIVIVRIDAPIYFANTSYISDRLREYEVEVDRSTGRGPDVERVYFVVIEMAPVTYIDSSAVQTLKDLYQEYKLRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLKETTMRSVSSPNDASTYIQRSSAPSNGSTEVSPSKTEKRDYLEHPFEGTGLRRSRSLSAASLLDGGKQKSSSGLKDENGAAYSNLIGTSDQQCERSNRRQISPLRRQCREKQFEMIYNDYGAVTERPCSAVSSRSYCDSSGNSSASSGNVSSKILDRYIDNGEQQVESSKPQHCIPPRNYPGHGSRRRPPRGRSIAPTSPKHVINEKSMSRPSEEFPSSNYHHFPAKYGENGLGHESPRTIAKNLIEILSQSHGIPKTSPKGFDNSMPITVGDILDRCASEEYDSNVDVIPQKFYSVHEPSEAINRNKMENSGLDRQNLIDHSEVLNLVETKEEMDGELKRRIKVAKERVMLFREERDRESFLQQRTGVSGLVQTIRHLSEEKTSLALEVLSLLESQIIERASAKEELRLAKETLDSQTKKLDREKIELQSELEVELDRRSNDWSLKLEKYQLEEQRLRERVRELAEQNVSLQREVSLINERDTENRSLISNSEQKVKELTIMMDKFRDENQVLMQNLSDLQDKYETAKEDRESFKRNFEEKDKECKELYKATTRLTRTCCDQQKTIDGLQERFTQELGKNTELEKLDKRVVKLQMEQIRLTEVELGLRRELESCRFEIDSLRHENISIFNRLKNSEKDNGALTIKLDEEMLARVDCLQHQGLTLLNESSQLCAELLEFIKGKVHYLSESIQGMEAVKNNLDGLYFIESEMKVQGLKRGTESLKRSLSIVSSLLHKKTNADGLMHLHGDASEHVLNSELKAERLLTSLVKEKLYSKELEIEQLQAEIATAARANHILRCEVQNALDNLSCITHKLKDLELQILKRDKNVNQLQNDLEESTTELAIIRGTVPKISEERDIMWDQVKQYSEENMLLNSEVNLLKKKIESLEEDILLREGQITILKDSMRNKSFDLLGNIESTDEFLVR 1539
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 17821985 17836793 - CmaCh04G026080.1 Cma04g02608 293689
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02608 1539 MobiDBLite consensus disorder prediction 616 645 - -
Cma04g02608 1539 Coils Coil 1061 1095 - -
Cma04g02608 1539 Coils Coil 1007 1045 - -
Cma04g02608 1539 PANTHER SULFATE TRANSPORTER 4.1-RELATED 46 237 - -
Cma04g02608 1539 CDD STAS_SulP_like_sulfate_transporter 483 599 - -
Cma04g02608 1539 PANTHER SULFATE TRANSPORTER 239 627 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma04g02608 1539 Coils Coil 1103 1158 - -
Cma04g02608 1539 MobiDBLite consensus disorder prediction 777 831 - -
Cma04g02608 1539 MobiDBLite consensus disorder prediction 814 830 - -
Cma04g02608 1539 MobiDBLite consensus disorder prediction 646 660 - -
Cma04g02608 1539 Pfam STAS domain 483 602 IPR002645 -
Cma04g02608 1539 Gene3D STAS domain 462 609 IPR036513 -
Cma04g02608 1539 PANTHER SULFATE TRANSPORTER 4.1-RELATED 239 627 - -
Cma04g02608 1539 Pfam Sulfate permease family 90 235 IPR011547 GO:0016021
Cma04g02608 1539 Pfam Sulfate permease family 243 432 IPR011547 GO:0016021
Cma04g02608 1539 Coils Coil 1386 1462 - -
Cma04g02608 1539 PANTHER SULFATE TRANSPORTER 46 237 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma04g02608 1539 SUPERFAMILY SpoIIaa-like 484 606 IPR036513 -
Cma04g02608 1539 MobiDBLite consensus disorder prediction 1 22 - -
Cma04g02608 1539 ProSiteProfiles STAS domain profile. 482 606 IPR002645 -
Cma04g02608 1539 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271|GO:0008272
Cma04g02608 1539 MobiDBLite consensus disorder prediction 616 660 - -
Cma04g02608 1539 Coils Coil 1477 1504 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma04g00253 Cma04g02608 CCT
Cma04g02608 Cma15g00426 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02608 Cma-Chr4:17821985 Cma08g00327 Cma-Chr8:1868717 8.05E-98 dispersed
Cma15g00413 Cma-Chr15:1855405 Cma04g02608 Cma-Chr4:17821985 1.59E-17 wgd
Cma15g00426 Cma-Chr15:1897938 Cma04g02608 Cma-Chr4:17821985 0 wgd
Cma04g00253 Cma-Chr4:1233583 Cma04g02608 Cma-Chr4:17821985 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02608 K18059 - bhj:120080520 1405.96