Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02624 ATGAGAGGTTTCCACACTCTTATACCAACCGACGTGGAATCTCACAGGAATGGGGTGATTAAGAAGACACATTTTTTATCTATGGCTTGTCGGAGTGACCTCCACTATGTGCTTATGGCACTGAAAGTTGGTGGAGAAAGCTGGATATTTGTCTCCGGCGACACCGGCGGTATGGAGCATCCCACCGGAATGTGGAGCCAAGCCAGGCCATTTATTGCAGTGATTCTTCAGCAGTTCATCACTGCCGGAATGGTCATCATTTCCAAGTTTGCTCTTAACCAAGGACTCAACCAGCACGTTTTAGTCGTCTATCGCTACGCCATTGCCACTGTTGTCATCGCTCCTTTAGCTCTCGTCTTCGAAAGGAAAGTGAGACCCAAGATGACTTGGTCCGTTTTTGGAAAGATTGTCTTGCTCGGATTATTGGAGCCTGCACTCGACCAAAACTTATATTACACGGGCATGAAGTACACTACAGCAACTTTCGCATCTGCTATGACCAACATGGTCCCTGGTCTTATCTTCCTCCTGGCTTGGATTGTTCGGCTGGAGAAGGTTAACGTAAGGCAGCTGCCAAGCCAGGCAAAGATATTAGGGACAGTGGTAGCGGTGGGAGGGGCTATGATAATGACTATGGTAAGGGGGCCAATTGTGAGCCTGCCATGGACAAACAACACCCTCCTCCATCACTCTTCTGCAGCTGCAGTCAGCCAGCAAGATTTTCTCAAGGGAGCTCTCATGATCACTACAGGCTGCATTTTTTGGTCTGTTTTTACTGTTCTTCAGGCGATTACAGTAAAGGTATACCCTGCACAGCTCTCCCTAACAGCTTTGATATGCTTCACCGGCGCCGTGCAAGCCTCAGTGATAGCTTTGGGAATGGAAAAGCACAATCCTGCTGCCTGGTCATTACATTTAGATTCCACCCTCTTAGCTCCTTTATACAGTGGAATCATGTCTTCAGGGGTCTCATATACTATTCAAGCAGCGATAATGAAAACGAAAGGGCCAGTTTTTGCAAGTACATTTAGTCCCCTAAGCATGGTCATTGTTGCAATCATCAGTTCATTCTCATTATCTGAGAAATTATACTTTGGAAGGGTTCTTGGAGCAGCTGTTATTATTACAGGTCTTTATCTAGTTCTGTGGGGTAAAATCAAGGATCAGGCTCCATACAAGTCGGATATTGAGAAGATAGCCCCATCCGATCAGAAACCGACTGCCATAACCGACATACCTAAGACTTCAGATAAAGAACTTGTAGTTGATCTTGCTAGAATAAAGACAGTGGATGGTTCTGTTTGA 1305 45.9 MRGFHTLIPTDVESHRNGVIKKTHFLSMACRSDLHYVLMALKVGGESWIFVSGDTGGMEHPTGMWSQARPFIAVILQQFITAGMVIISKFALNQGLNQHVLVVYRYAIATVVIAPLALVFERKVRPKMTWSVFGKIVLLGLLEPALDQNLYYTGMKYTTATFASAMTNMVPGLIFLLAWIVRLEKVNVRQLPSQAKILGTVVAVGGAMIMTMVRGPIVSLPWTNNTLLHHSSAAAVSQQDFLKGALMITTGCIFWSVFTVLQAITVKVYPAQLSLTALICFTGAVQASVIALGMEKHNPAAWSLHLDSTLLAPLYSGIMSSGVSYTIQAAIMKTKGPVFASTFSPLSMVIVAIISSFSLSEKLYFGRVLGAAVIITGLYLVLWGKIKDQAPYKSDIEKIAPSDQKPTAITDIPKTSDKELVVDLARIKTVDGSV 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17910496 17913960 - CmaCh04G026240.1 Cma04g02624 293705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02624 434 SUPERFAMILY Multidrug resistance efflux transporter EmrE 104 212 - -
Cma04g02624 434 Pfam EamA-like transporter family 243 382 IPR000620 GO:0016020|GO:0016021
Cma04g02624 434 Pfam EamA-like transporter family 72 211 IPR000620 GO:0016020|GO:0016021
Cma04g02624 434 SUPERFAMILY Multidrug resistance efflux transporter EmrE 306 386 - -
Cma04g02624 434 PANTHER WAT1-RELATED PROTEIN 66 397 IPR030184 GO:0016021|GO:0022857
Cma04g02624 434 PANTHER WAT1-RELATED PROTEIN 66 397 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01198 Cma04g02624 CCT
Cma04g00225 Cma04g02624 CCT
Cma04g02624 Cma04g00225 ECH
Cma04g02624 Cma04g01198 ECH
Cma04g01198 Cma04g02624 ECH
Cma04g00225 Cma04g02624 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01537 Cma-Chr2:8740312 Cma04g02624 Cma-Chr4:17910496 1.56E-47 dispersed
Cma04g01783 Cma-Chr4:8994980 Cma04g02624 Cma-Chr4:17910496 3.86E-148 dispersed
Cma04g02720 Cma-Chr4:18350626 Cma04g02624 Cma-Chr4:17910496 1.29E-58 dispersed
Cma15g00320 Cma-Chr15:1487220 Cma04g02624 Cma-Chr4:17910496 1.06E-57 dispersed
Cma04g02624 Cma-Chr4:17910496 Cma04g02625 Cma-Chr4:17924838 1.39E-143 tandem
Cma15g00409 Cma-Chr15:1834809 Cma04g02624 Cma-Chr4:17910496 6.57E-137 wgd
Cma03g00442 Cma-Chr3:4615905 Cma04g02624 Cma-Chr4:17910496 4.38E-139 wgd
Cma04g00224 Cma-Chr4:1085071 Cma04g02624 Cma-Chr4:17910496 4.71E-142 wgd
Cma04g02624 Cma-Chr4:17910496 Cma07g00964 Cma-Chr7:4659149 1.06E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02624 - - csv:101222430 626.32