Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02625 ATGGGGCAAGAAGGTCAAATGTTTGAGAAGGTAAAGCCATATTTGGGAGCAATTGCACTAAGATTCGCCTCTGCAGGAATGTCTATTATCTCCAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCAATTGGTGCCATTGTTGTTGCTCCTTTTGCCTTTGTCTTGGACAGGAAAATAAGACCAAAGATGACTCTTCGGATCTTCGGCAAGATCCTTCTACTGGGATTGCTCGAGCCTGTAATAGCTCAGAGCTTGATTTACTCTGGTACTAAATACACCACTGCAACTTTTGCAACTGCCATGTGCAATATTCTTCCTGCCTTTGCGTTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAGAAGATTTCGAAGCCAGGCAAAGATTTTAGGCACTTTAGTGACAGTAGGAGGAGCAATGATGATGACTCTTATAAAAGGACCCATGTTGAATTTGCCTTGGACAAAAGAGAACCACATCCCTCACTCTTATTCCACCCTTGCAAACAAGCAAGAACCTGTGAAGGCTGCCATTGTTATTACCATTTCAAGTATCTGTTCCTCAGCCTTCACCATTCTTCTGGCGCATACAATAAGATCATACCCAGCTGAGCTTACACTAACAACTTTCATATGCTTGGCTGGAGCTGTGGAAAGTACTATTTTAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCCTTACATGCAGATTCCATACTCTTAGCTGCCCTCTATGGTGGAATAATATCCTCTGGAATTGCTTATTATATCCAAGGAGTGGTAGTGAAGCTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTCGTAGTTGCTGTGATAAGTTCATTCATATTCGCCGAGAGACTGCGCTTAGGAAGGGTTATTGGAGCAGCTGTGATAATTACAGGCCTTTACTTGGTTCTGTGGGGCAAGAGCAAAGATCAGCTTCCATTAAAAGTGGGGAATGATGAATTACCAACTTCACACCAAAATTCAGCCACCACAAACCAGCAGCAGCCAAAGCCCTCAGATCAGCAGCTTCTAAAACCGGATGCCCCAACAGCAGTGAGCAACTCCAGTGCTTGA 1137 43.36 MGQEGQMFEKVKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKIRPKMTLRIFGKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIRRFRSQAKILGTLVTVGGAMMMTLIKGPMLNLPWTKENHIPHSYSTLANKQEPVKAAIVITISSICSSAFTILLAHTIRSYPAELTLTTFICLAGAVESTILALAFEWNNPAAWALHADSILLAALYGGIISSGIAYYIQGVVVKLKGPVFVTAFNPLSMVVVAVISSFIFAERLRLGRVIGAAVIITGLYLVLWGKSKDQLPLKVGNDELPTSHQNSATTNQQQPKPSDQQLLKPDAPTAVSNSSA 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17924838 17927236 - CmaCh04G026250.1 Cma04g02625 293706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02625 378 MobiDBLite consensus disorder prediction 341 378 - -
Cma04g02625 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cma04g02625 378 PANTHER WAT1-RELATED PROTEIN 9 337 - -
Cma04g02625 378 MobiDBLite consensus disorder prediction 337 378 - -
Cma04g02625 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 330 - -
Cma04g02625 378 PANTHER WAT1-RELATED PROTEIN 9 337 IPR030184 GO:0016021|GO:0022857
Cma04g02625 378 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020|GO:0016021
Cma04g02625 378 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02625 Cma-Chr4:17924838 Cma15g00409 Cma-Chr15:1834809 0 dispersed
Cma04g02624 Cma-Chr4:17910496 Cma04g02625 Cma-Chr4:17924838 1.39E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02625 - - csv:101208640 602.823