Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02634 ATGGACATCCATGTAATACCACAAACGCAAATCGATGACGGCCGTGCTTCAGTCAGCGTTCTTGATTCTGTAGTCTCGTCTCCAATCAACCCCCTCATTCACCTGCGGTTCGGCGGGAGAATGGAATTTGCCGACGAGCACACCGCCGGAGCCACCACCTCCAACTCCGACCGCCATAAGCCCTCCGACACGAGATACGGCGTTGACCTCTCATCCTCTGATAACGATACCGAAGATGCACATCCTGTTTTCTCTAACATGCCTGCTTCACTTGCACCACCAGTTTCTCCGATCCTTCCTCTGCAAAGTAAATGTAATGTAGTAATTCAGGCTGATATGGATGATAAATTGGAGACCATACAAAATATATGTCAGAAAATTGTGGACACCACGAACTTATACTCATTTTCTAAATTGGATGATCATCAAGTATATTCCCTTATGAGGCTGAGGGAAATTTCTCATCGGGTTATTAGTGACCGAGATTCAAGGGTGACAAAAAATGATGTGATTAGTGCTATGTGCTTTTACATCAACAGGATGGCAGGTAAGTGCAAGGATATTGTTGACATTTTGAATAGGATATCATATAAAGACCTAGACAGCCAGCAAGTGCAACAGCTATTGAGATTGAAAGAGCTTCTATGTGGGATTGTTGATGGAGCTAAAGATGTGGAGATTGAACCTTCCCATATTGTTGAACAGGGAATTGCAAATGATATGTGGACAACAGAGAGTCTAGAGGTCGAGCCAATTGACTCCAGCAATGATGATGTACTTCTTGGAGATACACAAATTATAATGGTTGAAGTTGAACAGGCAGTGGCTGAGTCTAGGCTCGAGAATGAATATTGTGACCTGTCACATGTTAAGCACACTGTTAGTTGGCCACCACATGGTTGCTTAACCTTAGAGTGGGTTGTAGAGATGATGAAAACACTGGAACAGTCTTCAAGAAATTACTCGCCTGCAGAGTTTCAACTTGTCATGCCAGTTTCTGTGGTAGATGAAATACTAGATATGGCTGCAAGCATCCTTCACAAGGAACCAAACTGTGTGGAAATTGACTGCCACGGAGAAGTTTCAAAAGTTGTTATAGTTGGGGACATTCATGGTCATTATCACGACTTACTTCACCTCTTTGAACTTGCTAACTTACCATCTAAGAGCCAATATTATGTTTTTAATGGCAATTATGTGGACAGAGGAGCATGGGGACTGGAGGTGTTTTTGGTCTTAATGGTGTGGAAGATCTTGATGCCTGATAGAGTATGTCTACTCCGTGGAAATCATGAAACCAGAATCTGTACATCATCCTACGGTTTTGAGAAAGAAGTAAGGACAAAATATGGCGAGCAAGGTGAAAATGTATATCACAGGTGCTTGGAAACATTTAAGGAACTTCCTTTGGCTGCAATTATTGCTGGAAAAGTATATACAACCCATGGAGGTTTATTTCGTAAGCCATGCAATCCTGATGTGCAGAATTACGAGGAAAGGAAGACACGCGAGCTGGAGATTGGATCCTTAGAAGACTTATCCAAGCTCGAAAGGTTTTTTGTCGATGTTCCAACTAAAGATGAAGATCCAAATATAATTTTGGCAGATGTATTATGGTCGGATCCTTCTAAAGTCGATGGTTTAAGGAAAAACCAAGCCAGAGGTGCAGGTTTATTGTGGGGTCCTGATGCGACTGAAGCATTCTTAAAGCTGTCTAATTTAAAGTTGATCATTAGATCACATGAAGGTCCAGATTCAAGGGACGGCAAAATTGATTTTGATGATATGATAATGGGTTATAGCTCAGATCATGACAGAGAATCAGGGAAACTATATACTCTATTTAGCGCTCCGGGTTTCCCACAGTTTGGTCGCAAGAGCTACAATAACGAGGGAGCATATGCTACTTTGAAGCATCCAGATTTTGAGATTCCAACCTTCCACACATTTAAAGCTGTAGATAAACCAAAGATAGACGTTTGCTATTTTGGCTGTGAAGGACATGATGTAGATTTAGACTTGACATTAATGGCTCTGGCTGATGCCGTCTCTTCTAAAAACTCTAGTCCTATTGAGATTCACTCTGGGGTTGATTTTGAGGCATTGGGCATATTAAACCCACCCTCTTGGAGCGTTACAATGACAGATGATGCTACAGGTACCCAGAGTGTTAAGATTCCGAAGGCCCCCGTGGTAGAAGGGTTGCCTTTGCCACCGAGCATCGAGGAACCTCATAAGGCTGCGTATGAGTACTTCCTGGAGCTCATTGCAGGACTGAAGTTTATGCTTCAAACAACGGAAAATAAGGACAAGTTACCCATTCCTCATCAAAGATCTGGTTGGGTGCCCAAAGGGAAATATCTCTCTGCTTTGTATAGCAGAGCGAATGAATTGACATAG 2400 42.46 MDIHVIPQTQIDDGRASVSVLDSVVSSPINPLIHLRFGGRMEFADEHTAGATTSNSDRHKPSDTRYGVDLSSSDNDTEDAHPVFSNMPASLAPPVSPILPLQSKCNVVIQADMDDKLETIQNICQKIVDTTNLYSFSKLDDHQVYSLMRLREISHRVISDRDSRVTKNDVISAMCFYINRMAGKCKDIVDILNRISYKDLDSQQVQQLLRLKELLCGIVDGAKDVEIEPSHIVEQGIANDMWTTESLEVEPIDSSNDDVLLGDTQIIMVEVEQAVAESRLENEYCDLSHVKHTVSWPPHGCLTLEWVVEMMKTLEQSSRNYSPAEFQLVMPVSVVDEILDMAASILHKEPNCVEIDCHGEVSKVVIVGDIHGHYHDLLHLFELANLPSKSQYYVFNGNYVDRGAWGLEVFLVLMVWKILMPDRVCLLRGNHETRICTSSYGFEKEVRTKYGEQGENVYHRCLETFKELPLAAIIAGKVYTTHGGLFRKPCNPDVQNYEERKTRELEIGSLEDLSKLERFFVDVPTKDEDPNIILADVLWSDPSKVDGLRKNQARGAGLLWGPDATEAFLKLSNLKLIIRSHEGPDSRDGKIDFDDMIMGYSSDHDRESGKLYTLFSAPGFPQFGRKSYNNEGAYATLKHPDFEIPTFHTFKAVDKPKIDVCYFGCEGHDVDLDLTLMALADAVSSKNSSPIEIHSGVDFEALGILNPPSWSVTMTDDATGTQSVKIPKAPVVEGLPLPPSIEEPHKAAYEYFLELIAGLKFMLQTTENKDKLPIPHQRSGWVPKGKYLSALYSRANELT 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17967687 17977021 - CmaCh04G026340.1 Cma04g02634 293715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02634 799 SUPERFAMILY Metallo-dependent phosphatases 308 658 IPR029052 -
Cma04g02634 799 PRINTS Serine/threonine phosphatase family signature 363 390 IPR006186 GO:0016787
Cma04g02634 799 PRINTS Serine/threonine phosphatase family signature 393 420 IPR006186 GO:0016787
Cma04g02634 799 PRINTS Serine/threonine phosphatase family signature 610 626 IPR006186 GO:0016787
Cma04g02634 799 PRINTS Serine/threonine phosphatase family signature 426 450 IPR006186 GO:0016787
Cma04g02634 799 PRINTS Serine/threonine phosphatase family signature 463 489 IPR006186 GO:0016787
Cma04g02634 799 PRINTS Serine/threonine phosphatase family signature 516 543 IPR006186 GO:0016787
Cma04g02634 799 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 116 772 - -
Cma04g02634 799 ProSitePatterns Serine/threonine specific protein phosphatases signature. 427 432 IPR006186 GO:0016787
Cma04g02634 799 SMART pp2a_7 330 654 IPR006186 GO:0016787
Cma04g02634 799 Pfam Calcineurin-like phosphoesterase 363 584 IPR004843 GO:0016787
Cma04g02634 799 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 116 772 - -
Cma04g02634 799 MobiDBLite consensus disorder prediction 49 82 - -
Cma04g02634 799 Gene3D - 290 683 IPR029052 -
Cma04g02634 799 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02634 Cma-Chr4:17967687 Cma16g01290 Cma-Chr16:9767684 3.82E-134 dispersed
Cma06g00171 Cma-Chr6:850961 Cma04g02634 Cma-Chr4:17967687 1.72E-14 dispersed
Cma06g00172 Cma-Chr6:851978 Cma04g02634 Cma-Chr4:17967687 8.00E-11 dispersed
Cma04g02628 Cma-Chr4:17941601 Cma04g02634 Cma-Chr4:17967687 1.31E-08 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02634 K04460 - csv:101211172 1329.69