Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02639 | ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCGCCGACGCCACCGCCAGCTGCAGCTGGCGGTGGCGGAGGTGGGGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGTTGGCGAAGATACCGCAACCAGAAGCGGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAGCCGCGCCATTTTTGCAAGACCTGTCGTCGGTACTGGACAAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGGTGTCGGCGGTCAAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCGGCGGGTTCGAGTACTTCAACGAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTAGGTCCTCCTCCGCCAACCCATTTCCCCTTTTTGGCTCCAAATTTACACAATCTGAGTGATTTTGGGAACATTGGGTTGAACTTCGAAGGCCTTCAAATCCCCAATTCATCAGGAGGAGAATCAACAATTTTATCAAGTGGAATCACGGATCATAACCAATGGAAAATACCCTTTTTTGCAAATCTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATGATCATCATCATCATCAACAACAACCAGCTGATATCTCAAAGCCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACTAATAGCAGCATGAAACTCATGGAGGATACTCAAGGGATTAACAATTTTTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAAGCACAGCACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA | 1020 | 46.37 | MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTPPPAAAGGGGGGGGGGVPSSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHNQWKIPFFANLHQQNGMYSNFMADDHHHHQQQPADISKPLLDNGFSTTTHLLGTTNSSMKLMEDTQGINNFSRNFLGIQPNDQFWNSITSTAPGNIAWTDQISDHFNSTSSTTHLL | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 17995394 | 17996845 | + | CmaCh04G026390.1 | Cma04g02639 | 293720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02639 | 339 | MobiDBLite | consensus disorder prediction | 122 | 160 | - | - | |
Cma04g02639 | 339 | MobiDBLite | consensus disorder prediction | 11 | 34 | - | - | |
Cma04g02639 | 339 | MobiDBLite | consensus disorder prediction | 10 | 64 | - | - | |
Cma04g02639 | 339 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 6 | 314 | - | - | |
Cma04g02639 | 339 | MobiDBLite | consensus disorder prediction | 140 | 160 | - | - | |
Cma04g02639 | 339 | Pfam | Dof domain, zinc finger | 81 | 135 | IPR003851 | GO:0003677|GO:0006355 | |
Cma04g02639 | 339 | ProSitePatterns | Zinc finger Dof-type signature. | 83 | 119 | IPR003851 | GO:0003677|GO:0006355 | |
Cma04g02639 | 339 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 6 | 314 | IPR045174 | GO:0003700|GO:0006355 | |
Cma04g02639 | 339 | ProSiteProfiles | Zinc finger Dof-type profile. | 81 | 135 | IPR003851 | GO:0003677|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00812 | Cma-Chr2:4795103 | Cma04g02639 | Cma-Chr4:17995394 | 1.80E-51 | dispersed | |
Cma04g01188 | Cma-Chr4:6067895 | Cma04g02639 | Cma-Chr4:17995394 | 2.35E-56 | dispersed | |
Cma04g02639 | Cma-Chr4:17995394 | Cma14g00157 | Cma-Chr14:642222 | 1.72E-57 | dispersed | |
Cma15g00398 | Cma-Chr15:1778177 | Cma04g02639 | Cma-Chr4:17995394 | 4.27E-160 | wgd | |
Cma20g00412 | Cma-Chr20:1971141 | Cma04g02639 | Cma-Chr4:17995394 | 1.31E-41 | wgd | |
Cma03g00431 | Cma-Chr3:4562700 | Cma04g02639 | Cma-Chr4:17995394 | 1.59E-40 | wgd | |
Cma04g00219 | Cma-Chr4:1060358 | Cma04g02639 | Cma-Chr4:17995394 | 1.40E-48 | wgd | |
Cma04g02639 | Cma-Chr4:17995394 | Cma07g00977 | Cma-Chr7:4730534 | 1.06E-30 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34976 | PF02701 | zf-Dof | 4.20E-31 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02639 | - | - | cmo:103498163 | 464.536 |