Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02639 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCGCCGACGCCACCGCCAGCTGCAGCTGGCGGTGGCGGAGGTGGGGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGTTGGCGAAGATACCGCAACCAGAAGCGGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAGCCGCGCCATTTTTGCAAGACCTGTCGTCGGTACTGGACAAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGGTGTCGGCGGTCAAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCGGCGGGTTCGAGTACTTCAACGAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTAGGTCCTCCTCCGCCAACCCATTTCCCCTTTTTGGCTCCAAATTTACACAATCTGAGTGATTTTGGGAACATTGGGTTGAACTTCGAAGGCCTTCAAATCCCCAATTCATCAGGAGGAGAATCAACAATTTTATCAAGTGGAATCACGGATCATAACCAATGGAAAATACCCTTTTTTGCAAATCTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATGATCATCATCATCATCAACAACAACCAGCTGATATCTCAAAGCCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACTAATAGCAGCATGAAACTCATGGAGGATACTCAAGGGATTAACAATTTTTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAAGCACAGCACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA 1020 46.37 MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTPPPAAAGGGGGGGGGGVPSSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHNQWKIPFFANLHQQNGMYSNFMADDHHHHQQQPADISKPLLDNGFSTTTHLLGTTNSSMKLMEDTQGINNFSRNFLGIQPNDQFWNSITSTAPGNIAWTDQISDHFNSTSSTTHLL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17995394 17996845 + CmaCh04G026390.1 Cma04g02639 293720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02639 339 MobiDBLite consensus disorder prediction 122 160 - -
Cma04g02639 339 MobiDBLite consensus disorder prediction 11 34 - -
Cma04g02639 339 MobiDBLite consensus disorder prediction 10 64 - -
Cma04g02639 339 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 314 - -
Cma04g02639 339 MobiDBLite consensus disorder prediction 140 160 - -
Cma04g02639 339 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677|GO:0006355
Cma04g02639 339 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Cma04g02639 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 314 IPR045174 GO:0003700|GO:0006355
Cma04g02639 339 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00812 Cma-Chr2:4795103 Cma04g02639 Cma-Chr4:17995394 1.80E-51 dispersed
Cma04g01188 Cma-Chr4:6067895 Cma04g02639 Cma-Chr4:17995394 2.35E-56 dispersed
Cma04g02639 Cma-Chr4:17995394 Cma14g00157 Cma-Chr14:642222 1.72E-57 dispersed
Cma15g00398 Cma-Chr15:1778177 Cma04g02639 Cma-Chr4:17995394 4.27E-160 wgd
Cma20g00412 Cma-Chr20:1971141 Cma04g02639 Cma-Chr4:17995394 1.31E-41 wgd
Cma03g00431 Cma-Chr3:4562700 Cma04g02639 Cma-Chr4:17995394 1.59E-40 wgd
Cma04g00219 Cma-Chr4:1060358 Cma04g02639 Cma-Chr4:17995394 1.40E-48 wgd
Cma04g02639 Cma-Chr4:17995394 Cma07g00977 Cma-Chr7:4730534 1.06E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34976 PF02701 zf-Dof 4.20E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02639 - - cmo:103498163 464.536