Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02639 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCGCCGACGCCACCGCCAGCTGCAGCTGGCGGTGGCGGAGGTGGGGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGTTGGCGAAGATACCGCAACCAGAAGCGGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAGCCGCGCCATTTTTGCAAGACCTGTCGTCGGTACTGGACAAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGGTGTCGGCGGTCAAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCGGCGGGTTCGAGTACTTCAACGAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTAGGTCCTCCTCCGCCAACCCATTTCCCCTTTTTGGCTCCAAATTTACACAATCTGAGTGATTTTGGGAACATTGGGTTGAACTTCGAAGGCCTTCAAATCCCCAATTCATCAGGAGGAGAATCAACAATTTTATCAAGTGGAATCACGGATCATAACCAATGGAAAATACCCTTTTTTGCAAATCTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGATGATCATCATCATCATCAACAACAACCAGCTGATATCTCAAAGCCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACTAATAGCAGCATGAAACTCATGGAGGATACTCAAGGGATTAACAATTTTTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAAGCACAGCACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA 1020 46.37 MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTPPPAAAGGGGGGGGGGVPSSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPPPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHNQWKIPFFANLHQQNGMYSNFMADDHHHHQQQPADISKPLLDNGFSTTTHLLGTTNSSMKLMEDTQGINNFSRNFLGIQPNDQFWNSITSTAPGNIAWTDQISDHFNSTSSTTHLL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17995394 17996845 + CmaCh04G026390.1 Cma04g02639 293720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02639 339 MobiDBLite consensus disorder prediction 122 160 - -
Cma04g02639 339 MobiDBLite consensus disorder prediction 11 34 - -
Cma04g02639 339 MobiDBLite consensus disorder prediction 10 64 - -
Cma04g02639 339 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 314 - -
Cma04g02639 339 MobiDBLite consensus disorder prediction 140 160 - -
Cma04g02639 339 Pfam Dof domain, zinc finger 81 135 IPR003851 GO:0003677|GO:0006355
Cma04g02639 339 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677|GO:0006355
Cma04g02639 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 314 IPR045174 GO:0003700|GO:0006355
Cma04g02639 339 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02639 - - - cmo:103498163 464.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00812 Cma-Chr2:4795103 Cma04g02639 Cma-Chr4:17995394 1.80E-51 dispersed
Cma04g01188 Cma-Chr4:6067895 Cma04g02639 Cma-Chr4:17995394 2.35E-56 dispersed
Cma04g02639 Cma-Chr4:17995394 Cma14g00157 Cma-Chr14:642222 1.72E-57 dispersed
Cma15g00398 Cma-Chr15:1778177 Cma04g02639 Cma-Chr4:17995394 4.27E-160 wgd
Cma20g00412 Cma-Chr20:1971141 Cma04g02639 Cma-Chr4:17995394 1.31E-41 wgd
Cma03g00431 Cma-Chr3:4562700 Cma04g02639 Cma-Chr4:17995394 1.59E-40 wgd
Cma04g00219 Cma-Chr4:1060358 Cma04g02639 Cma-Chr4:17995394 1.40E-48 wgd
Cma04g02639 Cma-Chr4:17995394 Cma07g00977 Cma-Chr7:4730534 1.06E-30 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT1G29160 56.9 1.6e-40 163.3
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 51.7 3.5e-40 162.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT1G29160 53.0 4.6e-40 161.8
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 53.8 6.0e-40 161.4
Cma18g00411 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.0e-41 165.2
Cma13g00606 CCT,CST 16 156 C2C2-Dof Transcription Factor Family AT2G34140 56.4 4.0e-41 165.2
Cma03g01320 CCT,CST 11 164 C2C2-Dof Transcription Factor Family AT2G34140 51.8 1.2e-37 153.7
Cma07g00189 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 50.9 4.6e-37 151.8
Cma04g02639 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 8.6e-40 161.8
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT2G37590 61.7 8.1e-38 155.2
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 64.8 1.4e-37 154.5
Cma14g00157 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 62.4 1.2e-36 151.4
Cma04g01188 CST 1 134 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.5e-36 151.0
Cma13g00133 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cma11g00141 CCT,CST,ECH 132 478 C2C2-Dof Transcription Factor Family AT3G47500 51.6 5.0e-83 305.8
Cma14g00157 CCT,CST,ECH 59 132 C2C2-Dof Transcription Factor Family AT5G02460 93.2 8.8e-39 158.7
Cma01g00595 CCT,CST,ECH 1 130 C2C2-Dof Transcription Factor Family AT5G02460 55.0 2.0e-38 157.5
Cma06g00304 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 60.4 2.0e-38 157.5
Cma13g00133 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cma15g00398 . 1 128 C2C2-Dof Transcription Factor Family AT5G02460 61.9 2.4e-36 150.6
Cma14g00157 CCT,CST,ECH 53 139 C2C2-Dof Transcription Factor Family AT3G55370 79.3 2.6e-37 153.7
Cma13g00133 CCT,CST,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 50.6 5.8e-37 152.5
Cma03g00431 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.8e-37 152.5
Cma11g00228 CCT,CST 30 311 C2C2-Dof Transcription Factor Family AT5G60850 51.9 4.0e-47 186.0
Cma10g00281 CCT,CST 26 318 C2C2-Dof Transcription Factor Family AT5G60850 52.8 8.8e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34976 PF02701 zf-Dof 4.20E-31 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02639 Cma_Chr04 FPKM 10.931395 10.546884 8.211939 8.567738 10.603004 11.265013 12.40552 0.426 0.671146 0.691626