Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02644 ATGAAGGTCTCGGTAGTTTCTCGCAGTGGGAGAGAAGTTGTTGACGGCGGCATTCAACTAAGCGATTCTGCTTCGGTGGCGGATCTGCAGGATGTGATTTACAAGCGAACCAAAAAGTTCTACCCTGCTAGGCAGCGGTTAACTCTTCCAGTTCAACCTGGTTTAAAGGAGAGGCCTACCGTTCTTAACTACAAGAAAAGCCTCAGAGAGTATTGTAGCAACAACTCAGACAACATAACTGTTGTCTTCAAGGACTTGGGTCCACAAGTTTCTTATCGTACTCTCTTCTTTTTTGAATACTTGGGCCCCTTGATCCTCTACCCCATCTTTTACTACTTCCCTGTCTATCAGTTCTTCGGCTACAAGGCCGAACGTGTCATCCATCCAGTTCAGACGTATGCAATGTACTACTGGTGTTTTCACTACTTCAAACGAATCATGGAAACATTTTTCGTGCATAGGTTCAGCCACGCGACCTCACCGCTTTCGAATGTGTTTCGAAACTGCGCTTACTACTGGTCTTTTGGTTCGTATATTGCATATTATGTTAATCACCCACTTTATAGCCCTGTTGGTGACCTTCAAATGAAGATTGGGTTTGCATTTGGTTTGCTGTGTCAAGTGTGTAACTTCTACTGTCATATTTTGCTGAGAAAACTGCGGAGCCCTGAGGGGAATGGGGGATATCAAATCCCAAAGGGGTTTCTGTTCAACATTGTGACATGTGCAAACTACACAACAGAGATATATCAGTGGGCTGGATTTGCTGGTGATGATGCTCCCAGAGCAGTTTTCCCTAGCATTGTCGGCCGACCTCGTCACACCGGCGTGATGGTCGGCATGGGCCAGAAAGATGCTTATGTAGGTGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTTAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTTCTCCTAACTGAGGCCCCTCTTAACCCCAAAGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAAACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTATATGCCAGTGGTCGAACAACTGGAATTGTGATGGATTCTGGTGATGGTGTGAGTCATACAGTCCCCATTTATGAGGGGTATGCTCTCCCACACGCCATTCTTCGACTCGACCTTGCTGGCCGTGACCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATACTCATTCACGACCACAGCAGAGCGAGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATCGCGCTTGACTATGAGCAGGAACTTGAAACTTCTAAGACCAGTTCATCAGTTGAAAAGAGCTACGAGTTGCCTGATGGACAAGTCATCACGATAGGTGCCGAACGTTTTAGATGTCCGGAAGTTCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCGGGCATTCATGAAACTACATATAATTCCATCATGAAGTGCGACGTGGATATTAGGAAGGATCTGTATGGTAACATCGTCCTCTCCGGTGGTTCGACCATGTTTACGGGCATTGCCGATAGAATGAGTAAGGAGATCTCTGCATTGGCGCCGAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAGTACAGTGTTTGGATTGGTGGCTCCATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGGCCATCGATTGTGCACAGGAAGTGCTTCTAA 1830 46.17 MKVSVVSRSGREVVDGGIQLSDSASVADLQDVIYKRTKKFYPARQRLTLPVQPGLKERPTVLNYKKSLREYCSNNSDNITVVFKDLGPQVSYRTLFFFEYLGPLILYPIFYYFPVYQFFGYKAERVIHPVQTYAMYYWCFHYFKRIMETFFVHRFSHATSPLSNVFRNCAYYWSFGSYIAYYVNHPLYSPVGDLQMKIGFAFGLLCQVCNFYCHILLRKLRSPEGNGGYQIPKGFLFNIVTCANYTTEIYQWAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18005520 18011469 + CmaCh04G026440.1 Cma04g02644 293725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02644 609 ProSitePatterns Actins and actin-related proteins signature. 338 350 IPR020902 -
Cma04g02644 609 SUPERFAMILY Actin-like ATPase domain 381 609 IPR043129 -
Cma04g02644 609 ProSitePatterns Actins signature 2. 590 598 IPR004001 -
Cma04g02644 609 Pfam Actin 253 609 IPR004000 -
Cma04g02644 609 ProSitePatterns Actins signature 1. 287 297 IPR004001 -
Cma04g02644 609 PANTHER ACTIN-97 241 608 - -
Cma04g02644 609 SUPERFAMILY Actin-like ATPase domain 253 386 IPR043129 -
Cma04g02644 609 Gene3D - 372 572 - -
Cma04g02644 609 Gene3D Actin; Chain A, domain 4 414 505 - -
Cma04g02644 609 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 199 256 IPR001104 GO:0006629|GO:0016627
Cma04g02644 609 CDD Ubl_TECR_like 2 86 - -
Cma04g02644 609 Gene3D - 253 603 - -
Cma04g02644 609 CDD NBD_sugar-kinase_HSP70_actin 308 415 - -
Cma04g02644 609 Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase 159 256 IPR001104 GO:0006629|GO:0016627
Cma04g02644 609 SMART actin_3 253 609 IPR004000 -
Cma04g02644 609 PANTHER ACTIN 241 608 IPR004000 -
Cma04g02644 609 PRINTS Actin signature 374 393 IPR004000 -
Cma04g02644 609 PRINTS Actin signature 470 486 IPR004000 -
Cma04g02644 609 PRINTS Actin signature 295 317 IPR004000 -
Cma04g02644 609 PRINTS Actin signature 260 269 IPR004000 -
Cma04g02644 609 PRINTS Actin signature 349 362 IPR004000 -
Cma04g02644 609 PRINTS Actin signature 283 294 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02644 Cma-Chr4:18005520 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma18g00965 Cma-Chr18:8198267 Cma04g02644 Cma-Chr4:18005520 2.31E-13 dispersed
Cma15g00387 Cma-Chr15:1758196 Cma04g02644 Cma-Chr4:18005520 5.27E-180 transposed
Cma15g00386 Cma-Chr15:1755346 Cma04g02644 Cma-Chr4:18005520 0 wgd
Cma20g00406 Cma-Chr20:1944722 Cma04g02644 Cma-Chr4:18005520 0 wgd
Cma04g02644 Cma-Chr4:18005520 Cma07g00992 Cma-Chr7:5110022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02644 K10355 - csv:101220611 705.286