Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02655 ATGGCGGCAACTGTTTCAACAGCATTGATCTCTTTCTTGCTAATAATGTCGTTGGCCGTGGAATGCAGAGAACATAAGGGAGTTTACGGCGGCGGGCCCTGGCATAGCGCCCACGCCACATTCTACGGCGGCAATGACGCCTCCGGCACTATGGGGGGGGCGTGTGGTTACGGCAACTTGTACACCCAGGGCTACGGCGTAAACACGGCAGCATTGAGCGCAGCTCTGTTCAACGACGGGTCCAGCTGTGGAGCTTGTTTCGAAATCAAGTGCGTGAATGACCCACAATGGTGCCACGCTGGAAACCCGTCGATTTTCGTGACAGCCACCAACTTTTGTCCTCCCAATTATGCGCTCCCTAATGACAACGGCGGGTGGTGCAATCCTCCTCGCCCTCACTTCGACCTGTCCATGCCCATGTTCCTCAAAATCGCCCAGTACCGCGCCGGGATCGTCCCTGTCTCGTTTCGCAGGGTGGGATGTAGAAGGGAGGGAGGGATGAGGTTCACGATGAATGGGTTCAAATATTTCAATCTGGTACTGATAACCAACGTGGCAGGCGCTGGGGACATTGTGAGTGTGCGCATCAAGGGGTCGAAGACAGGGTGGATGAGCATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACGATGTGTTAGTGGGTCAATCACTGTCGTTTAGTGTTAAAGGCAGCGATGGAAGGGTTTTGACTTCCTCCAACGTTGTTCCTTCTCATTGGCAGTTTGTATCTCTCGACTCTTTCCCTGGCGCTATAGGTACCCCTCGATTTCTCTCTCACTGCTATCCCCTCGATTCGTCCCTCGCCGGCGGCAACCGTCAATTGTGGGGGGACAGCTTTTGTATCCTTGATTTGGTACAAGGGCTGTTAAAAGCTCAAAGCACAGGATACGAAAAACCCGATACCAACACACCCTTCAAGAATACAAGCAGTTTTATTGATTTTGACTCTGAATTCATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCGTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCCTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGATGATTATGGTCAGAGAACCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCGGATTTAAATCCTGAGCTCGTACGACGTGTGGAGAAAGATTTACTAAACATCATGGCAGGAGGAACTACCGAAAATGCAGATGTTGGAGTGGCTGAACATCAAGATGATAAACATGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACTCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGATTAG 1584 49.75 MAATVSTALISFLLIMSLAVECREHKGVYGGGPWHSAHATFYGGNDASGTMGGACGYGNLYTQGYGVNTAALSAALFNDGSSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVGCRREGGMRFTMNGFKYFNLVLITNVAGAGDIVSVRIKGSKTGWMSMTRNWGQNWQSNDVLVGQSLSFSVKGSDGRVLTSSNVVPSHWQFVSLDSFPGAIGTPRFLSHCYPLDSSLAGGNRQLWGDSFCILDLVQGLLKAQSTGYEKPDTNTPFKNTSSFIDFDSEFMEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREPDLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDKHENSHHASAKPASTPAAKPDVMETETTVGEPERSDSDDSDHSID 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18055290 18059419 - CmaCh04G026550.1 Cma04g02655 293736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02655 527 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Cma04g02655 527 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Cma04g02655 527 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Cma04g02655 527 PANTHER EXPANSIN-A15 10 250 IPR002963 GO:0009664
Cma04g02655 527 SUPERFAMILY PHL pollen allergen 163 249 IPR036749 -
Cma04g02655 527 SMART dpbb_1 69 156 IPR007112 -
Cma04g02655 527 CDD TAF7 328 473 IPR006751 GO:0005669|GO:0006367
Cma04g02655 527 Gene3D - 19 162 IPR036908 -
Cma04g02655 527 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Cma04g02655 527 Gene3D - 167 252 IPR036749 -
Cma04g02655 527 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Cma04g02655 527 Pfam Lytic transglycolase 69 155 IPR009009 -
Cma04g02655 527 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 249 IPR007117 -
Cma04g02655 527 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Cma04g02655 527 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Cma04g02655 527 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Cma04g02655 527 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Cma04g02655 527 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Cma04g02655 527 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Cma04g02655 527 PANTHER EXPANSIN-A6 10 250 - -
Cma04g02655 527 MobiDBLite consensus disorder prediction 476 527 - -
Cma04g02655 527 MobiDBLite consensus disorder prediction 476 490 - -
Cma04g02655 527 MobiDBLite consensus disorder prediction 508 527 - -
Cma04g02655 527 SMART TAFII55_N_2 327 471 IPR006751 GO:0005669|GO:0006367
Cma04g02655 527 Pfam TAFII55 protein conserved region 327 461 IPR006751 GO:0005669|GO:0006367
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00211 Cma04g02655 CCT
Cma04g01180 Cma04g02655 CCT
Cma04g00211 Cma04g02655 ECH
Cma04g01180 Cma04g02655 ECH
Cma04g02655 Cma04g00211 ECH
Cma04g02655 Cma04g01180 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00797 Cma-Chr2:4725802 Cma04g02655 Cma-Chr4:18055290 2.91E-140 dispersed
Cma04g02655 Cma-Chr4:18055290 Cma13g00123 Cma-Chr13:843427 6.81E-138 dispersed
Cma20g00396 Cma-Chr20:1904421 Cma04g02655 Cma-Chr4:18055290 1.28E-144 wgd
Cma03g00422 Cma-Chr3:4515929 Cma04g02655 Cma-Chr4:18055290 8.20E-138 wgd
Cma04g00211 Cma-Chr4:1005461 Cma04g02655 Cma-Chr4:18055290 1.05E-142 wgd
Cma04g02655 Cma-Chr4:18055290 Cma07g00999 Cma-Chr7:5154276 2.62E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02655 - - csv:101216168 438.728