Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02664 ATGGCGGCTTCCTTTTTCTTTTTGCTTCTTTTACCACTCTCTTTCTTCTTCACTGATTCCTCCTTGGCTTCTGTTCAAGATCCTCATCTTGTCGTTCAACAAGTTCAAAGGAGCATCAATGAATCAAGAATAAGAAGAAACTTGGGATATTTGTCATGTAGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGAAAGCGCTTAGCCGACTGCGCCATTGGGTTCGGCAAAAACGCCATCGGCGGCAGAAACGGCCGCTTCTACATGGTCACAGACGCGGGCGACGACGACCCTCTCAACCCCAGACCAGGAACCCTCCGCCACGCCGTCATCCAAAACGAGCCCTTATGGATCATCTTCAAGCGTGACATGGTAATCCAACTAAGACAAGAACTAGTGATGAACTCGTTCAAGACCATCGACGGGCGTGGGGCCAGCGTGCATGTGGCAGGTGGGCCATGCATCACCATCCACTACGCCACAAACATCATAATCCACGGCATCCACATACATGACTGTAAGAGAGGGGGGAATGGTAACATACGGGACTCCCCACAGCACTCCGGGTGGTGGACTATATCAGACGGTGATGGAGTGTCGATCTTTGGTGGGAAGAATATTTGGGTTGACCATTGTTCTTTGTCTAATTGTAACGATGGGTTGATCGACGCGATTCATGGTTCCACGGCGATCACGATTTCGAATAATTACATGACGCATCATGATAAAGTGATGCTGTTGGGACATAGTGACTCTTACACTCAAGACAAGAATATGCAAGTTACTATTGCCTTCAACCATTTTGGTGAGGGCCTTGTTCAACGAATGCCCAGATGCAGGCATGGGTATTTCCATGTGGTGAACAACGATTACACCCACTGGGAAATGTACGCAATTGGAGGGAGTGCTTCACCGACTATATACAGTCAAGGCAACAGATTTTTGGCGCCGGACGTCCGATACCAAAAGGAGGTGACAAAGCACGAGGACGCGCCGGAGAGTGAGTGGCGTCACTGGAACTGGCGGTCAGAGGGCGACATGATGTTAAACGGCGCCTATTTTCGCCAGTCCGGCGCCGGCGCTGCGTCCAGCTACGCAAGAGCTTACAGTCTCAGCGCCAGACCCTCCTCCCTGGTTGGTTCTATCACGGTCACAGCCGGCGCCCTCAACTGCCGCAGAGGCTCCCGTTGCTAG 1218 51.4 MAASFFFLLLLPLSFFFTDSSLASVQDPHLVVQQVQRSINESRIRRNLGYLSCRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYMVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTISDGDGVSIFGGKNIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDVRYQKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18099102 18101614 - CmaCh04G026640.1 Cma04g02664 293745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02664 405 PANTHER PECTATE LYASE 3 402 - -
Cma04g02664 405 Gene3D - 56 398 IPR012334 -
Cma04g02664 405 SMART amb_all 131 328 IPR002022 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Cma04g02664 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Cma04g02664 405 PANTHER PECTATE LYASE 18-RELATED 3 402 IPR045032 GO:0030570
Cma04g02664 405 Pfam Pectate lyase 137 322 IPR002022 -
Cma04g02664 405 SUPERFAMILY Pectin lyase-like 33 400 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02664 Cma-Chr4:18099102 Cma13g00770 Cma-Chr13:6648875 0 dispersed
Cma18g00204 Cma-Chr18:1108778 Cma04g02664 Cma-Chr4:18099102 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02664 K01728 - csv:101217834 736.487