Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02669 ATGGAAGCTCCTGCAAGTTTCAGCCCTCTTAGTATTGCTTTGAGCTTAGCCATGGCAGCAGTCATCCTCTGTCAGTTGCTGCTGAAACTCTTTGCAGCTGCAACGCCAAGCCCTAGCTTGCCTCCTGGCTGCATGGGCTTCCCCTTCGTTGGAGAGACACTCAGCTTCCTCAAGCCCCATCATTCTAACTCCATTGGGACCTTCCTCCAGTATCACTGTTCCAGGTTTGGGACGGTTTTCAAGTCTCATCTATTTGGTTCGCCGGCGATAGTGTCATGTGATCGAGAGCTTAACATGTTCATTCTTCAAAACGACGACAAACTTTTCAAAGTGAGTTATCCCAAGGCCATGCATGGCATTCTCGGCAGCAATTCTTTGATCATCGCCGCCGGAGACACCCACCGGAAGCTCAGAAACGTCGTCGTTAGCTTTGTCAGCTGGTGCAAGTCCAACCCCACTTTCCTTCACTCCGTGGACAAGCTCTCTGTCTCTTTAATGGAGTCGTGGAGATGCCAAACTCGTGTGTTTTTCTGCAAAGAAGTGAAAATGTTTGCTTTGAGTGTTATGGTGAAGGAATTGTTGGGCATTGAAGCGAACGAGTCGGTTGGGTTGAGAATATTGGACGAGTTCGAAACTTATATGAAAGGCTTTGTTTCTTTACCTCTGAATCTCCCCGGAACTCCATACTATAAGGCTGTTAAGGCCCGAGCGAAGCTTTCGGGCATCGTGAAAGAGATGATGAAAGAGAGGAAAAAGAAGGGATTAGTGGTAGGGGTGGAAAAAGAAGGGGATGATCATGAGAACTTTCTAGACGTGATAATGTCAAATTGGAAGCTTGATGAGGAAGAGATTGTGAGCGTTGTGTTGGACATATTGCTTGGAGGATATGAGACAACAGCTACTCTTATGGGATTGATTGTCTACTTTCTTGCACATTCACCTCCCAATGTTCTTGCAAAGTTAAAGGAAGAACATGAAGCAATAAGAAATGGCAAAGGGAAGGGAGAGTATCTGAATTTAGAAGATTACAAGCAAATGGAGTTCACATGCAATGTGATATATGAAGCCATGAGATGTGGAAATGTGGTCAAATTCTTACATAGAGAGGCCATTAAAGATGTCAAATTCAAAGACATTTTCATTCCTTCGGGATGGAAAGTTCATCCAGTCTTCTCAGCCATTCATCTGGATCCAACCCTTCACCCATATCCTCAACAGTTCAATCCATGGAGATGGAGGGATGATAAAGAAATGAGCAAGAAGGTGACGCCCTTTGGTGGAGGCCCAAGGCTTTGTCCTGGGATTGAGCTTGCCAAGCTAGAGATAGCTTTCTTCCTCCATCATCTTGTCCTCAATTATAGGTGGAAGACAAGCTCAGATGAATGTCCACTGGCTTACCCATATTTTCATCGGAATCAACTCAATCTCCGTTGTTCGTTTGTTCATCCGAAACAGTTGCATAACTTGTTTCGTCTCTTCATTTGCGCCGCTCACTGTCGACCATTGTTTCGGTCCCTCGCACGCGTAACAGTTAGGATGCCCAAGGAGGAGAGCTTTGAAGTTGATTTAACAACTGATTGTAGCCCGGAATCTAGTAAGAAATTAAAAGGAAGTAAAAAGAAGAAGAAGCAGTTATTGGTGGAAGGTGTAGATGTCATGGAAAGGAATGTGGAAGGATCTGTTGAGCTGGGGGAAAGCAACATAAACTCTGAAGTGAAAAATAAGAAAAAGAGAAGGAAGAGTACTAAACAATGTGTAGTGGAGAACTCTATCCAGGCTGAGGCAGGAGAATATGAAATTAAAGCAGAGAGATCTGTGAAAGAGGGCAGTCCTTTGTCTGATGGTGGAAGTGAGAAAAATGAAATTCTTGAGGAGAGGCAATTTGCATTGGAAGATGATGAGAATGAAAGTGCAGACAGCATAGTTAGAGAAACATCTGGAGAGAAGATTTTAGAGTCTAACAATGGTAAAACAGATCAAAGGAATATAAAGAGGAAGAAACGTCTCTTAAAGGAAGTTGCAAATGCGGACATGCGTGGAATTTGTTACTTGAGCCGTGTTCCTCCACATATGGATCCTTTGAAACTTCGTCAGATCCTCTCGCAGTATGGGGAAATACAAAGAATTTATCTTGCACCCGAGGACGCCGCAAATCAAGTAAAACGAAAGCGTGCAGGAGGGTTTCGAGGACAATTTTTTTCAGAAGGATGGGTTGAATTTACTGATAAAAGAGTCGCCAAGAAGGTGGCTAATATGTTAAACGGCGAACCAATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAATATCAAATATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAAATGGCTTTAGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCACGAGCATTGAAATCCATTGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCGAGAAGATTCAGAAATGAATTCTGAACTTGCTGATAGCCAGAAACTCCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAGATTCTGCAGTACAAGACAAACCAAAACTATCTACAAATTTCCTTGCTGGGGTGTTTGGAAGTTCCTAG 2667 43.27 MEAPASFSPLSIALSLAMAAVILCQLLLKLFAAATPSPSLPPGCMGFPFVGETLSFLKPHHSNSIGTFLQYHCSRFGTVFKSHLFGSPAIVSCDRELNMFILQNDDKLFKVSYPKAMHGILGSNSLIIAAGDTHRKLRNVVVSFVSWCKSNPTFLHSVDKLSVSLMESWRCQTRVFFCKEVKMFALSVMVKELLGIEANESVGLRILDEFETYMKGFVSLPLNLPGTPYYKAVKARAKLSGIVKEMMKERKKKGLVVGVEKEGDDHENFLDVIMSNWKLDEEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKEEHEAIRNGKGKGEYLNLEDYKQMEFTCNVIYEAMRCGNVVKFLHREAIKDVKFKDIFIPSGWKVHPVFSAIHLDPTLHPYPQQFNPWRWRDDKEMSKKVTPFGGGPRLCPGIELAKLEIAFFLHHLVLNYRWKTSSDECPLAYPYFHRNQLNLRCSFVHPKQLHNLFRLFICAAHCRPLFRSLARVTVRMPKEESFEVDLTTDCSPESSKKLKGSKKKKKQLLVEGVDVMERNVEGSVELGESNINSEVKNKKKRRKSTKQCVVENSIQAEAGEYEIKAERSVKEGSPLSDGGSEKNEILEERQFALEDDENESADSIVRETSGEKILESNNGKTDQRNIKRKKRLLKEVANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAANQVKRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEPIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVDKSRALKSIEERLKKKQKLREDSEMNSELADSQKLPKLIRNFPQTQPVADSAVQDKPKLSTNFLAGVFGSS 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18119812 18127401 + CmaCh04G026690.1 Cma04g02669 293750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02669 888 MobiDBLite consensus disorder prediction 628 662 - -
Cma04g02669 888 SUPERFAMILY RNA-binding domain, RBD 677 762 IPR035979 GO:0003676
Cma04g02669 888 Gene3D Cytochrome P450 32 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 CDD RRM_ABT1_like 680 777 IPR034353 -
Cma04g02669 888 PANTHER CYTOCHROME P450, FAMILY 724, SUBFAMILY A, POLYPEPTIDE 1 44 465 - -
Cma04g02669 888 Coils Coil 823 843 - -
Cma04g02669 888 SUPERFAMILY Cytochrome P450 38 464 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PANTHER CYTOCHROME P450 26 44 465 - -
Cma04g02669 888 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 680 762 IPR000504 GO:0003723
Cma04g02669 888 Gene3D - 613 765 IPR012677 -
Cma04g02669 888 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 683 762 IPR000504 GO:0003723
Cma04g02669 888 Pfam Cytochrome P450 41 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Cma04g02669 888 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PRINTS E-class P450 group I signature 390 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 SMART rrm1_1 681 765 IPR000504 GO:0003723
Cma04g02669 888 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g02669 888 PRINTS P450 superfamily signature 432 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00780 Cma-Chr4:3975123 Cma04g02669 Cma-Chr4:18119812 6.04E-121 dispersed
Cma04g02669 Cma-Chr4:18119812 Cma14g01267 Cma-Chr14:10046353 1.03E-83 dispersed
Cma04g02669 Cma-Chr4:18119812 Cma04g01122 Cma-Chr4:5801740 1.24E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02669 K12639 - csv:101215045 706.827