Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02680 ATGGAGTCCGGTGATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCAAATCCTTGTTGGGCCAAGGATTGGGGAGGGTGCACATGGCAAAGTGCACAAGGGGAAATACAAAAACGAAAATGTTGCTATTAAAATAATTCGAAGAGGTGAAACTCCAGAAGAAATTGCAAAAACGGAGGCACGCTTTGCTCGAGAGGTCGCAATGTTATCCAAAGTTCAGCACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCCATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTACGAAAGTACTTGTTGAGTATACGTCCAAGGTGCTTGGACTTGCACGAAGCAGCTTGTTTTGCACTTGATATAGCACGCGCAATGGAATGCCTGCATTCCCATGGGATCATTCACCGCGATCTCAAACCTGAGAATTTGATCTTGACCGGAGACCACAAAACTGTTAAGCTTACAGACTTTGGTTTGGCTAGAGAAGAGTCAGTAACAGAAATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACGGTCACTTTAAGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGACGTTTATAGCTTTGGAATTGTATTCTGGGAGATCGTCCAAAATAAGTTGCCTTTCGAAGGCATGTCGAATCTACAAGCTGCATATGCAGCTGCTTTTAAGAATTTCCGACCCAATGCCGAGAACCTCCCGGAGGATTTGGCCCCGATTATAACTTCCTGTTGGACCGAGGATCCGAATACTCGGCCGAACTTCAGTGTAATCATACAGATGCTCTTGAAATATCTCTCCACCATTCCACAGCCAGAGTATGTTACACCACCAACAATGCAGGCACCTGAGAATGCAGTGCTGCCACCAGAGTCTCCTGGAACTAGTTCTTTGATGGCTGCCACAAGACGTGGCATGGGGGATGTCCCGAAAAGCGAGATAGAAGAGAAACCAAGCAGTTTCTTCTCATGTTTCTCTGGTAGCTGTTACTGA 1062 45.39 MESGDGLCSKEFDLDAKWLVDPKQILVGPRIGEGAHGKVHKGKYKNENVAIKIIRRGETPEEIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDLHEAACFALDIARAMECLHSHGIIHRDLKPENLILTGDHKTVKLTDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIVQNKLPFEGMSNLQAAYAAAFKNFRPNAENLPEDLAPIITSCWTEDPNTRPNFSVIIQMLLKYLSTIPQPEYVTPPTMQAPENAVLPPESPGTSSLMAATRRGMGDVPKSEIEEKPSSFFSCFSGSCY 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18179202 18183396 - CmaCh04G026800.1 Cma04g02680 293761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02680 353 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Cma04g02680 353 ProSitePatterns Protein kinases ATP-binding region signature. 31 52 IPR017441 GO:0005524
Cma04g02680 353 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672|GO:0006468
Cma04g02680 353 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672|GO:0006468
Cma04g02680 353 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672|GO:0006468
Cma04g02680 353 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672|GO:0006468
Cma04g02680 353 Gene3D Transferase(Phosphotransferase) domain 1 106 305 - -
Cma04g02680 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cma04g02680 353 SMART serkin_6 25 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02680 353 ProSiteProfiles Protein kinase domain profile. 25 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02680 353 Pfam Protein tyrosine and serine/threonine kinase 29 285 IPR001245 GO:0004672|GO:0006468
Cma04g02680 353 CDD STKc_MAP3K-like 31 285 - -
Cma04g02680 353 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Cma04g02680 353 PIRSF TyrPK_CSF1-R 115 339 - -
Cma04g02680 353 PIRSF TyrPK_CSF1-R 11 119 - -
Cma04g02680 353 PANTHER BNAA06G32000D PROTEIN 1 328 - -
Cma04g02680 353 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02680 Cma11g01458 CCT
Cma04g02680 Cma14g00675 CCT
Cma04g02680 Cma11g01458 ECH
Cma04g02680 Cma14g00675 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02680 Cma-Chr4:18179202 Cma06g00194 Cma-Chr6:988739 3.05E-147 dispersed
Cma10g00092 Cma-Chr10:373193 Cma04g02680 Cma-Chr4:18179202 0 wgd
Cma11g01458 Cma-Chr11:9621175 Cma04g02680 Cma-Chr4:18179202 0 wgd
Cma14g00675 Cma-Chr14:3434476 Cma04g02680 Cma-Chr4:18179202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68552 PF07714 PK_Tyr_Ser-Thr 1.70E-57 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02680 - - csv:101220915 610.912