Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02680 | ATGGAGTCCGGTGATGGGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTCGATCCGAAGCAAATCCTTGTTGGGCCAAGGATTGGGGAGGGTGCACATGGCAAAGTGCACAAGGGGAAATACAAAAACGAAAATGTTGCTATTAAAATAATTCGAAGAGGTGAAACTCCAGAAGAAATTGCAAAAACGGAGGCACGCTTTGCTCGAGAGGTCGCAATGTTATCCAAAGTTCAGCACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCCATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTACGAAAGTACTTGTTGAGTATACGTCCAAGGTGCTTGGACTTGCACGAAGCAGCTTGTTTTGCACTTGATATAGCACGCGCAATGGAATGCCTGCATTCCCATGGGATCATTCACCGCGATCTCAAACCTGAGAATTTGATCTTGACCGGAGACCACAAAACTGTTAAGCTTACAGACTTTGGTTTGGCTAGAGAAGAGTCAGTAACAGAAATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACGGTCACTTTAAGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGACGTTTATAGCTTTGGAATTGTATTCTGGGAGATCGTCCAAAATAAGTTGCCTTTCGAAGGCATGTCGAATCTACAAGCTGCATATGCAGCTGCTTTTAAGAATTTCCGACCCAATGCCGAGAACCTCCCGGAGGATTTGGCCCCGATTATAACTTCCTGTTGGACCGAGGATCCGAATACTCGGCCGAACTTCAGTGTAATCATACAGATGCTCTTGAAATATCTCTCCACCATTCCACAGCCAGAGTATGTTACACCACCAACAATGCAGGCACCTGAGAATGCAGTGCTGCCACCAGAGTCTCCTGGAACTAGTTCTTTGATGGCTGCCACAAGACGTGGCATGGGGGATGTCCCGAAAAGCGAGATAGAAGAGAAACCAAGCAGTTTCTTCTCATGTTTCTCTGGTAGCTGTTACTGA | 1062 | 45.39 | MESGDGLCSKEFDLDAKWLVDPKQILVGPRIGEGAHGKVHKGKYKNENVAIKIIRRGETPEEIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDLHEAACFALDIARAMECLHSHGIIHRDLKPENLILTGDHKTVKLTDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIVQNKLPFEGMSNLQAAYAAAFKNFRPNAENLPEDLAPIITSCWTEDPNTRPNFSVIIQMLLKYLSTIPQPEYVTPPTMQAPENAVLPPESPGTSSLMAATRRGMGDVPKSEIEEKPSSFFSCFSGSCY | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18179202 | 18183396 | - | CmaCh04G026800.1 | Cma04g02680 | 293761 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02680 | 353 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 1 | 328 | - | - | |
Cma04g02680 | 353 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 52 | IPR017441 | GO:0005524 | |
Cma04g02680 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 101 | 114 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g02680 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 139 | 157 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g02680 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 213 | 235 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g02680 | 353 | PRINTS | Tyrosine kinase catalytic domain signature | 256 | 278 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g02680 | 353 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 305 | - | - | |
Cma04g02680 | 353 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672|GO:0006468 | |
Cma04g02680 | 353 | SMART | serkin_6 | 25 | 289 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g02680 | 353 | ProSiteProfiles | Protein kinase domain profile. | 25 | 289 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g02680 | 353 | Pfam | Protein tyrosine and serine/threonine kinase | 29 | 285 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g02680 | 353 | CDD | STKc_MAP3K-like | 31 | 285 | - | - | |
Cma04g02680 | 353 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 104 | - | - | |
Cma04g02680 | 353 | PIRSF | TyrPK_CSF1-R | 115 | 339 | - | - | |
Cma04g02680 | 353 | PIRSF | TyrPK_CSF1-R | 11 | 119 | - | - | |
Cma04g02680 | 353 | PANTHER | BNAA06G32000D PROTEIN | 1 | 328 | - | - | |
Cma04g02680 | 353 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 313 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02680 | Cma11g01458 | CCT | |
Cma04g02680 | Cma14g00675 | CCT | |
Cma04g02680 | Cma11g01458 | ECH | |
Cma04g02680 | Cma14g00675 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02680 | Cma-Chr4:18179202 | Cma06g00194 | Cma-Chr6:988739 | 3.05E-147 | dispersed | |
Cma10g00092 | Cma-Chr10:373193 | Cma04g02680 | Cma-Chr4:18179202 | 0 | wgd | |
Cma11g01458 | Cma-Chr11:9621175 | Cma04g02680 | Cma-Chr4:18179202 | 0 | wgd | |
Cma14g00675 | Cma-Chr14:3434476 | Cma04g02680 | Cma-Chr4:18179202 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68552 | PF07714 | PK_Tyr_Ser-Thr | 1.70E-57 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02680 | - | - | csv:101220915 | 610.912 |