Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02682 ATGGCTTCCGATAATCTCGCCACCGTTTCCGGCGCCGACGACGAGAAGTTTGGATTCCGACGAGAGGAGATGTATCAGAGCAGCCTCGCTGGCACCGTCAGCGCCTATGATCGTCACGTTTTTCTCTGCTACAAGACTCCGGAGGCCTGGCCATCGCATCTCGAAGCATCTGATTCCGACGCCCTCCCTAGGCTCCTCTCTGCCGCTCTCAAAGCTCGCAAGGATGATATCTCCGTTAAGACGAAGCTGACAATGTTCGCTGGACGCGAGGAAACTGGATTTTCGGATGGAGATGTGTTGATTTTTCCCGAAATGGTCAAATACAGGGGTTTAAAAGAGTCAGATGTGGATGGCTTCGTGGATGATGTGCTTGTGAATGATAAACAGTGGGCATCCGGAGTGCCAAAGGCTTTCACTGGCTCTCACGTGTTTGTGTGTGTTCATGCTAGTCGAGATCGGAGATGTGGTGTCTGTGGACCCGTTCTTGTTCAGAAGTTGGATGAGGAGATTGAGTTACGAGGACTTAAGGAACGGGTTTTTGTCAGTGCATGTTCACACATTGGAGGACACAAGTATGCCGGAAACTTGATCATATATCAACCTGGTGTGGATGGGAAGACAACTGGTCACTGGTACGGATATGTAACTCCTGAAGATGTCTCTGAATTGTTTGAACTACATATTGCAAAGGGCGAGGTCGTGGAAAGGCTTTTGAGAGGGCAAATGGGCACAAATCCCGAGGAAGGCAAAAAGGAAGATGAACTAAAGATTCCAAATGGAGATGATACAAAGAAAAGCAAGGTTGAAATTGAAGAAAACAGCGGTCAAAACAAAGTGGAAACAATAGCAGGTTGTTGCCAGGGCAGTAATGGATTCACTTGTTGCAGAGATGAAAGTTCAGGGAAAAGTAGTAGAATCGAAAACCAGTCGAAAGAAGCTTCAGAAGAGCAGGTACCAAAGAAAGCTAATAAATTTTCTTGCTGGACAGGACAATGGGAACAAAGTGAAATTCTGGCTGCTGCTGCGACAATTGGAGCAGTGGCCACTGTCGCTGTAGCCTACAGCATCTACAGGAGATCAGGATAA 1086 47.42 MASDNLATVSGADDEKFGFRREEMYQSSLAGTVSAYDRHVFLCYKTPEAWPSHLEASDSDALPRLLSAALKARKDDISVKTKLTMFAGREETGFSDGDVLIFPEMVKYRGLKESDVDGFVDDVLVNDKQWASGVPKAFTGSHVFVCVHASRDRRCGVCGPVLVQKLDEEIELRGLKERVFVSACSHIGGHKYAGNLIIYQPGVDGKTTGHWYGYVTPEDVSELFELHIAKGEVVERLLRGQMGTNPEEGKKEDELKIPNGDDTKKSKVEIEENSGQNKVETIAGCCQGSNGFTCCRDESSGKSSRIENQSKEASEEQVPKKANKFSCWTGQWEQSEILAAAATIGAVATVAVAYSIYRRSG 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18189496 18192224 - CmaCh04G026820.1 Cma04g02682 293763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02682 361 MobiDBLite consensus disorder prediction 297 319 - -
Cma04g02682 361 MobiDBLite consensus disorder prediction 300 319 - -
Cma04g02682 361 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 6 361 IPR009737 -
Cma04g02682 361 Gene3D Glutaredoxin 37 136 - -
Cma04g02682 361 Gene3D Glutaredoxin 140 241 - -
Cma04g02682 361 CDD TRX_Fd_Sucrase 140 242 IPR009737 -
Cma04g02682 361 Pfam Sucrase/ferredoxin-like 29 240 IPR009737 -
Cma04g02682 361 MobiDBLite consensus disorder prediction 245 264 - -
Cma04g02682 361 PANTHER PROTEIN, PUTATIVE-RELATED 6 361 - -
Cma04g02682 361 MobiDBLite consensus disorder prediction 242 264 - -
Cma04g02682 361 SUPERFAMILY Thioredoxin-like 142 244 IPR036249 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02682 Cma11g01457 CCT
Cma04g02682 Cma15g00360 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01068 Cma-Chr1:7896589 Cma04g02682 Cma-Chr4:18189496 6.02E-100 dispersed
Cma04g02682 Cma-Chr4:18189496 Cma15g00360 Cma-Chr15:1652049 0 dispersed
Cma11g01457 Cma-Chr11:9603199 Cma04g02682 Cma-Chr4:18189496 2.83E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02682 - - cmo:103498108 629.017