Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02687 ATGGCTTCTTCATCCAGCTACTCAAATTCACCATGTGCAGCATGCAAGTTCCTGCGAAGAAAATGCTTAGCGGACTGCATATTTGCGCCCTACTTTCCACCCGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCCATGAGGTCCACCCTCATCAGCGCGAGGACGCCGTCAATTCTCTCGCCTATGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGCTGCGTTGGAGCCATCTCTATCCTCCAGCGACAAGTCATTCGCCTCCAGAAGGAGCTTGACGCTACGAATGCTGATTTGGTTCGATATGCCAGCGGGGGCGCTCGCCCGTATGGACGGAGGGCAGCAGCGCAGTCTGATTTCAAAAGCAGTGCCTCAGAAACATTATGA 423 52.96 MASSSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLHEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIRLQKELDATNADLVRYASGGARPYGRRAAAQSDFKSSASETL 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18208584 18211496 + CmaCh04G026870.1 Cma04g02687 293768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02687 140 Coils Coil 90 110 - -
Cma04g02687 140 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Cma04g02687 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 119 - -
Cma04g02687 140 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 4 119 - -
Cma04g02687 140 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02687 Cma11g01450 CCT
Cma04g02687 Cma11g01450 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02687 Cma-Chr4:18208584 Cma11g00077 Cma-Chr11:374968 7.81E-69 dispersed
Cma10g00105 Cma-Chr10:429384 Cma04g02687 Cma-Chr4:18208584 2.20E-65 wgd
Cma11g01450 Cma-Chr11:9563056 Cma04g02687 Cma-Chr4:18208584 6.22E-69 wgd
Cma13g00866 Cma-Chr13:7097857 Cma04g02687 Cma-Chr4:18208584 1.76E-57 wgd
Cma18g00185 Cma-Chr18:954033 Cma04g02687 Cma-Chr4:18208584 2.60E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34979 PF03195 LOB 1.40E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02687 - - csv:101216489 236.113