Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02687 | ATGGCTTCTTCATCCAGCTACTCAAATTCACCATGTGCAGCATGCAAGTTCCTGCGAAGAAAATGCTTAGCGGACTGCATATTTGCGCCCTACTTTCCACCCGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCCATGAGGTCCACCCTCATCAGCGCGAGGACGCCGTCAATTCTCTCGCCTATGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGCTGCGTTGGAGCCATCTCTATCCTCCAGCGACAAGTCATTCGCCTCCAGAAGGAGCTTGACGCTACGAATGCTGATTTGGTTCGATATGCCAGCGGGGGCGCTCGCCCGTATGGACGGAGGGCAGCAGCGCAGTCTGATTTCAAAAGCAGTGCCTCAGAAACATTATGA | 423 | 52.96 | MASSSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLHEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIRLQKELDATNADLVRYASGGARPYGRRAAAQSDFKSSASETL | 140 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18208584 | 18211496 | + | CmaCh04G026870.1 | Cma04g02687 | 293768 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02687 | 140 | Coils | Coil | 90 | 110 | - | - | |
Cma04g02687 | 140 | ProSiteProfiles | LOB domain profile. | 10 | 111 | IPR004883 | - | |
Cma04g02687 | 140 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 119 | - | - | |
Cma04g02687 | 140 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 25 | 4 | 119 | - | - | |
Cma04g02687 | 140 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 107 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02687 | Cma11g01450 | CCT | |
Cma04g02687 | Cma11g01450 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02687 | Cma-Chr4:18208584 | Cma11g00077 | Cma-Chr11:374968 | 7.81E-69 | dispersed | |
Cma10g00105 | Cma-Chr10:429384 | Cma04g02687 | Cma-Chr4:18208584 | 2.20E-65 | wgd | |
Cma11g01450 | Cma-Chr11:9563056 | Cma04g02687 | Cma-Chr4:18208584 | 6.22E-69 | wgd | |
Cma13g00866 | Cma-Chr13:7097857 | Cma04g02687 | Cma-Chr4:18208584 | 1.76E-57 | wgd | |
Cma18g00185 | Cma-Chr18:954033 | Cma04g02687 | Cma-Chr4:18208584 | 2.60E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34979 | PF03195 | LOB | 1.40E-41 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02687 | - | - | csv:101216489 | 236.113 |