Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02707 ATGCTATCAAAATGGAAGATTCCTTACATGGGTTTGAAGATTATTTCTTTGGAACATATTTTATTTAGTTTTACATCAATTCCTTCAGAAAAAAGATATCCAGTGAATGCCAAGGATTATAACTTGCATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAAGGAGACTGTCGCTATAAAGGCTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACGATGACTTTGATTGATCATCCAAATTTGTTAAAAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTTTTCTGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCCAATGGTACAGTAAAACTAGCTGATTTTGGAGTCTCCGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCTTGCTGGATGGCACCGGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAGGAAATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGTCCCAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAACATGCCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGAACGCTTTAAGAAGCTAAAGGCAAAGGAGGCTGATCTTCTGGTGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATGGAAGATCAAGATGTACATACAACAATGCAAAGAAACAAGAATAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGAAAGTCCAAATCACCGAACTGCTGCTGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATTATTTGGAGAGTTCCCTTGCTTCTTTCCCTACAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATTTAAGCACGGACAGTGTAAGGCCAGTCGATAGGGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTCCCCTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTATAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTGTTGTAGATGGTGATAGGGATTATGTGCAGTCAAAATTTCCATCTGAACGTAATTTCAGTGGTCCATTATTATATCGTCAAAAAAGAGATACAAATAACATATCATCTGTTGAGGATACATCAGATGGAACAGTAGTTCAATGCAAGGGGCGGTTTAAAGTTACTTCGGCGGAGCTTAGTCCGAAGGGTCCTATGACGGGTTCATTTAGCCCAATCTGTGGAGGGACAATGAGCCCAACATCCCTGAACCTTACGCCTTCTTTACTCCTCCCATCAATGCAATGCATTCTGCAGCAGAACATCCTGCAACGGGAAGAAATCGTTAAATTGATAAAGTATTTGGAACAATTGACTGGCAAGAATCCAGATGTATCAGAGACGGCCACTAGTGACCTTCTGCAGATGCCACCGGCTTCCTTGAGAGAAAGAGAGTTACAGTCTCAGGTCGTTCATCTGCAGCAGAGGATTGATAATCTCAACGAGGAATTAGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAAGACACATGATTTCTATGGCAAATAAAGAGAACATAAAAGAAAGCAAGTAA 2100 41.38 MLSKWKIPYMGLKIISLEHILFSFTSIPSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLKETVAIKALDLEKCNNDLDGIRREVQTMTLIDHPNLLKAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAFSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNMEDQDVHTTMQRNKNNDFSFPVEGSSLESPNHRTAAASQEDGFSDLHYLESSLASFPTKPLEALKDCFDIYEDLSTDSVRPVDRENGRTEGESSGQSGPLPRHYMSENKRSYSGSLISDNAVSPKKIVVDGDRDYVQSKFPSERNFSGPLLYRQKRDTNNISSVEDTSDGTVVQCKGRFKVTSAELSPKGPMTGSFSPICGGTMSPTSLNLTPSLLLPSMQCILQQNILQREEIVKLIKYLEQLTGKNPDVSETATSDLLQMPPASLRERELQSQVVHLQQRIDNLNEELEKQKLKNAEFERHMISMANKENIKESK 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18283235 18292668 - CmaCh04G027070.1 Cma04g02707 293788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02707 699 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 28 693 - -
Cma04g02707 699 MobiDBLite consensus disorder prediction 396 421 - -
Cma04g02707 699 Pfam Protein kinase domain 40 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02707 699 CDD STKc_OSR1_SPAK 38 301 - -
Cma04g02707 699 Coils Coil 651 685 - -
Cma04g02707 699 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Cma04g02707 699 Gene3D Transferase(Phosphotransferase) domain 1 121 339 - -
Cma04g02707 699 ProSiteProfiles Protein kinase domain profile. 40 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02707 699 MobiDBLite consensus disorder prediction 461 489 - -
Cma04g02707 699 SUPERFAMILY Protein kinase-like (PK-like) 37 302 IPR011009 -
Cma04g02707 699 SMART serkin_6 40 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02707 699 Gene3D Phosphorylase Kinase; domain 1 29 116 - -
Cma04g02707 699 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 28 693 - -
Cma04g02707 699 MobiDBLite consensus disorder prediction 396 420 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02707 Cma15g00341 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02707 Cma-Chr4:18283235 Cma06g00589 Cma-Chr6:2831850 0 dispersed
Cma01g00193 Cma-Chr1:879244 Cma04g02707 Cma-Chr4:18283235 0 transposed
Cma14g01789 Cma-Chr14:12922071 Cma04g02707 Cma-Chr4:18283235 2.23E-107 transposed
Cma15g00341 Cma-Chr15:1575235 Cma04g02707 Cma-Chr4:18283235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68553 PF00069 Pkinase 2.40E-59 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02707 K08835 - csv:101205102 1244.57