Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02707 ATGCTATCAAAATGGAAGATTCCTTACATGGGTTTGAAGATTATTTCTTTGGAACATATTTTATTTAGTTTTACATCAATTCCTTCAGAAAAAAGATATCCAGTGAATGCCAAGGATTATAACTTGCATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAAGGAGACTGTCGCTATAAAGGCTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACGATGACTTTGATTGATCATCCAAATTTGTTAAAAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTTTTCTGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCCAATGGTACAGTAAAACTAGCTGATTTTGGAGTCTCCGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCTTGCTGGATGGCACCGGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAGGAAATTTTCTAAGTCATTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGTCCCAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAACATGCCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGAACGCTTTAAGAAGCTAAAGGCAAAGGAGGCTGATCTTCTGGTGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATGGAAGATCAAGATGTACATACAACAATGCAAAGAAACAAGAATAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGAAAGTCCAAATCACCGAACTGCTGCTGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATTATTTGGAGAGTTCCCTTGCTTCTTTCCCTACAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATTTAAGCACGGACAGTGTAAGGCCAGTCGATAGGGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTCCCCTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTATAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATTGTTGTAGATGGTGATAGGGATTATGTGCAGTCAAAATTTCCATCTGAACGTAATTTCAGTGGTCCATTATTATATCGTCAAAAAAGAGATACAAATAACATATCATCTGTTGAGGATACATCAGATGGAACAGTAGTTCAATGCAAGGGGCGGTTTAAAGTTACTTCGGCGGAGCTTAGTCCGAAGGGTCCTATGACGGGTTCATTTAGCCCAATCTGTGGAGGGACAATGAGCCCAACATCCCTGAACCTTACGCCTTCTTTACTCCTCCCATCAATGCAATGCATTCTGCAGCAGAACATCCTGCAACGGGAAGAAATCGTTAAATTGATAAAGTATTTGGAACAATTGACTGGCAAGAATCCAGATGTATCAGAGACGGCCACTAGTGACCTTCTGCAGATGCCACCGGCTTCCTTGAGAGAAAGAGAGTTACAGTCTCAGGTCGTTCATCTGCAGCAGAGGATTGATAATCTCAACGAGGAATTAGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAAGACACATGATTTCTATGGCAAATAAAGAGAACATAAAAGAAAGCAAGTAA 2100 41.38 MLSKWKIPYMGLKIISLEHILFSFTSIPSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLKETVAIKALDLEKCNNDLDGIRREVQTMTLIDHPNLLKAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAFSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNMEDQDVHTTMQRNKNNDFSFPVEGSSLESPNHRTAAASQEDGFSDLHYLESSLASFPTKPLEALKDCFDIYEDLSTDSVRPVDRENGRTEGESSGQSGPLPRHYMSENKRSYSGSLISDNAVSPKKIVVDGDRDYVQSKFPSERNFSGPLLYRQKRDTNNISSVEDTSDGTVVQCKGRFKVTSAELSPKGPMTGSFSPICGGTMSPTSLNLTPSLLLPSMQCILQQNILQREEIVKLIKYLEQLTGKNPDVSETATSDLLQMPPASLRERELQSQVVHLQQRIDNLNEELEKQKLKNAEFERHMISMANKENIKESK 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18283235 18292668 - CmaCh04G027070.1 Cma04g02707 293788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02707 699 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 28 693 - -
Cma04g02707 699 MobiDBLite consensus disorder prediction 396 421 - -
Cma04g02707 699 Pfam Protein kinase domain 40 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02707 699 CDD STKc_OSR1_SPAK 38 301 - -
Cma04g02707 699 Coils Coil 651 685 - -
Cma04g02707 699 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Cma04g02707 699 Gene3D Transferase(Phosphotransferase) domain 1 121 339 - -
Cma04g02707 699 ProSiteProfiles Protein kinase domain profile. 40 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02707 699 MobiDBLite consensus disorder prediction 461 489 - -
Cma04g02707 699 SUPERFAMILY Protein kinase-like (PK-like) 37 302 IPR011009 -
Cma04g02707 699 SMART serkin_6 40 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02707 699 Gene3D Phosphorylase Kinase; domain 1 29 116 - -
Cma04g02707 699 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 28 693 - -
Cma04g02707 699 MobiDBLite consensus disorder prediction 396 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02707 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 1244.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g02707 Cma15g00341 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02707 Cma-Chr4:18283235 Cma06g00589 Cma-Chr6:2831850 0 dispersed
Cma01g00193 Cma-Chr1:879244 Cma04g02707 Cma-Chr4:18283235 0 transposed
Cma14g01789 Cma-Chr14:12922071 Cma04g02707 Cma-Chr4:18283235 2.23E-107 transposed
Cma15g00341 Cma-Chr15:1575235 Cma04g02707 Cma-Chr4:18283235 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma01g01216 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 61.2 4.1e-217 751.9
Cma09g00851 CST 1 692 MAP Kinase Kinase Kinase Kinase AT1G53165 60.4 1.7e-215 746.5
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 1.2e-67 255.4
Cma01g01216 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 63.9 5.1e-228 788.1
Cma09g00851 CST 1 691 MAP Kinase Kinase Kinase Kinase AT3G15220 62.7 3.1e-225 778.9
Cma18g01102 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.6e-67 255.0
Cma18g01102 . 4 843 MAP Kinase Kinase Kinase Kinase AT1G69220 58.8 4.7e-241 831.6
Cma01g01216 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 8.2e-68 256.1
Cma09g00851 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 9.1e-67 252.7
Cma04g02707 CST 29 692 MAP Kinase Kinase Kinase Kinase AT5G14720 65.1 1.5e-248 856.3
Cma15g00341 CST 1 699 MAP Kinase Kinase Kinase Kinase AT5G14720 63.9 4.3e-248 854.7
Cma06g00589 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.8e-244 842.8
Cma16g01228 CST 637 1378 MAP Kinase Kinase Kinase Kinase AT4G24100 61.4 1.2e-240 830.1
Cma16g01228 CST 641 1379 MAP Kinase Kinase Kinase Kinase AT4G10730 61.9 1.6e-242 836.3
Cma06g00589 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.2 3.1e-241 832.0
Cma01g00193 . 4 492 MAP Kinase Kinase Kinase Kinase AT1G70430 51.0 1.9e-133 473.8
Cma16g01228 CST 635 983 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 5.4e-117 419.1
Cma06g00589 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 3.5e-116 416.4
Cma01g00193 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.4 1.8e-217 753.1
Cma15g00341 CST 1 327 MAP Kinase Kinase Kinase Kinase AT1G23700 59.4 1.2e-103 374.4
Cma04g02707 CST 25 352 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 1.2e-101 367.9
Cma01g00193 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 7.3e-88 322.0
Cma06g00589 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 1.0e-73 275.0
Cma14g01789 . 401 877 MAP Kinase Kinase Kinase Kinase AT4G14480 57.0 4.2e-144 508.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68553 PF00069 Pkinase 2.40E-59 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02707 Cma_Chr04 FPKM 32.588245 32.075222 34.746021 37.480942 26.943207 27.547642 29.234612 27.566294 25.417479 26.785788