Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02715 ATGATGACGGACGGTTTGATCTTCAACCGGTCTCCAGGTCACAGCAACATGCTGTTTTTCGGGAGTGGCGATTCCGTTCTTCGTGAACCAAGGTTCGCGATGGGGATGGAGGAAACTTCAAAGAGGCGACCCTTTTTCAGCTCACCGGATGACCTGTTCGACGACGACTACTACGATGACCAACCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGTTTTGAATCAGAAAATAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAACAAACTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAATCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGAACTATGATCTTCTCAAATCTTCATATGGTTCCTTTCGTTCGAGCTATGACTTTGTTGTCAAGGAGAATGAACGGCTCAAAGCCGAGGTAGCTTCTTTATCTGAGAAACTTCTAGCTAAGGAAGTGGTTGAATCCTCGTTTCAAGCTAAGAAATCCGAGCCATTTTTGGAACACCAAATCCTTGTTCCTGTTGTGCAACATAGTATGAAGATTGAGGACCACCATAGTTGCAGGAGCAATGGAAGTGCCGTGCTGGACGAGGACGGTCCTCATCTCTTAGACAGTGGGGATTCGTACCTCCTGAGCAATGACTATAATGGCTGTGTTTTGCCCGTTTTTGGAATGAACTCGGAGGAGGAGGATGGAAGTGATGATGGTCAGGGTTACTTCTCAGCCGTTTATACAACAGACGATCAGCAGACTCATGAGGTAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 48.39 MMTDGLIFNRSPGHSNMLFFGSGDSVLREPRFAMGMEETSKRRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFESENKLEPERKTELANKLGLQPRQVAVWFQNRRARWKTKQLERNYDLLKSSYGSFRSSYDFVVKENERLKAEVASLSEKLLAKEVVESSFQAKKSEPFLEHQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPHLLDSGDSYLLSNDYNGCVLPVFGMNSEEEDGSDDGQGYFSAVYTTDDQQTHEVEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18325430 18327503 + CmaCh04G027150.1 Cma04g02715 293796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02715 278 Gene3D - 58 127 - -
Cma04g02715 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 259 IPR045224 GO:0003700
Cma04g02715 278 SUPERFAMILY Homeodomain-like 49 122 IPR009057 -
Cma04g02715 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Cma04g02715 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Cma04g02715 278 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Cma04g02715 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Cma04g02715 278 SMART HOX_1 63 124 IPR001356 GO:0003677
Cma04g02715 278 Coils Coil 140 167 - -
Cma04g02715 278 CDD homeodomain 65 121 IPR001356 GO:0003677
Cma04g02715 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Cma04g02715 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Cma04g02715 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 4 259 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02715 Cma11g01423 CCT
Cma04g02715 Cma14g00644 CCT
Cma04g02715 Cma15g00329 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00773 Cma-Chr4:3938724 Cma04g02715 Cma-Chr4:18325430 1.34E-25 dispersed
Cma04g02715 Cma-Chr4:18325430 Cma13g00928 Cma-Chr13:7361934 1.02E-44 dispersed
Cma11g01423 Cma-Chr11:9382874 Cma04g02715 Cma-Chr4:18325430 2.60E-75 wgd
Cma14g00644 Cma-Chr14:3207688 Cma04g02715 Cma-Chr4:18325430 4.13E-78 wgd
Cma15g00329 Cma-Chr15:1521359 Cma04g02715 Cma-Chr4:18325430 2.36E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34982 PF00046 Homeodomain 3.60E-17 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02715 K09338 - csv:101210106 478.404