Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02716 ATGGATCCGAACTTGATCTGGGGTTATCCTGAAAAGAGGGATTCATGGAGGACAATTTTCACTTTGGCTTATCAGGCTTTGGGGGTTGTTTATGGGGATTTGAGCACTTCTCCGCTGTATGTGTACAAAAGCACTTTTGCAAAAAACCTTCAGCACTCTGAGACGAATGAGGAGGTTTATGGGGTTCTTTGCTTTGTGTTTTGGACTTTGACACTTATCCCTTTACTTAAATATGTGTTCATAGTTCTTAAAGCTGATGATAATGGCGAAGGAGGAACTTTTGCTCTGTATTCACTGCTCTGCCGCCATGCTCGCCTTAGCTCCCTTCCAAATCAACAGCTTGCAGATGAGGAGCTTTCTGCTTATAAAAGAGATACACCTGAACCCACTAGTAATTTTAGTTTCAGTTCTTGTTTGAAAGCAACTCTGGAGAAATGTAAAGTTTTGCAGAGAATCTTGCTTGTTCTTGCCTTGATTGGGACTTGCATGGTTATCGGTGATGGAGTTCTCACACCAGCAATTTCAGTCTTTTCAGCTGTGTCAGGGGTTGAGTTATCCATGGCTAAGGAACATCACCAATATATTAAAGTTCCTCTGGCATGTGCCATTTTGGTATTCTTGTTTGCATTACAACATTACGGCACGCATCGGGTCGGGTTCCTGTTTGCTCCAGTTGTAATTGTATGGCTTCTATGCATCAGTGCCATTGGTTTGTACAATATCTTCTATTGGAATCCTCTTGTTTACAAAGCACTCTCCCCATATTACATGTATAAGTTCTTGAAAAAAACCAAAAAGCAAGGTTGGATGGCGTTGGGCGGAGTCCTCTTGTGTATAACGGGCTCGGAAGCTATGTTTGCTGATCTTGGACACTTCTCACATTTTTCTATCAAGCTTGCTTTCACTTTTGTGGTTTATCCATCCTTAGTTCTTGCATATATGGGACAAGCTGCTTATCTTTCTAAGCATCACAATCTCGACAACGATTATCGAATCGGATTCTATGTTTCTGTTCCTGAGAAAGTAAGATGGCCTGTTCTTGCAATAGCAATACTTGCAGCAGTTGTGGGCAGTCAAGCAATCATCACGGGCACGTTTTCGATCATCAAACAATGTTCTTCTTTGGGTTGTTTTCCAAGAGTAAAGATCGTTCATACGTCTTCGAAAATACATGGCCAGATTTACATTCCCCTCATCAACTGGATACTAATGATATTATGTTTAGCTGTTACCATTGGATTTCGAGAGACAGAACGCTTGGGCAATGCAGCAGGGTTGGCAGTTATTACCGTTATGCTAGTCTCGACGTGCCTAATGTCACTTGTTATTGTGTTATGTTGGCATAAAAGTGTCCTCCTAGCCATAGCCTTCCTAGTCTTCTCTGGCTCCATAGAAGCTCTCTACTTTTCTGCCTCTCTTATGAAGTTCTTTGAAGGGGCTTGGGTTCCTATTGCACTTTCACTGACATTCCTTGTGGTTATGTATGTTTGGCACTATGGCACTCTAAAGAAATATGAGGCTGATGTTGAAAACAAAGTCCCTATAAATTGGCTCCTTGGTATAGGTCCCAAAATCGGGATCGTTCGGGTTCGGGGGATCGGCCTTGTACATACCGAACTCGTTTCAGGGATCCCTTCCATTTTCTCTCATTTTGTCACAAACATTCCAGCCTTCCACGAAATTCTAGTCTTCCTCTGCATCAAATCTGTCACAATGCCTCATGTGAGGCCTGAGGAAAGGTTCTTGGTAGGAAGAGTTGGGCCGAAGGAGTATCGACTCTACCGCTGCATTGCACGATATGGCTACCGTGATGTGCACAAGGATGACTTGGAATTCGAGAGAGACCTCGCCTGCAGCATTGCAGAATTCATCCGATCCGAGAAAACAGAATGCAACACTTTCAGACACAATGACTTGGATGACAATGACGACAACGAAAGAATGAGAGTGATTGGGACTTCATCAACTCAACTAAACGGTATACAAATGTGTGAAAACGAATCATGTTCTTTGCCGATCATCGACAGTTCAGAGATAAGGTCGGAGAGGTTGAGGAGGAAAAGAGTAAGGTTCGTTGTACCCGAAAGTACGAAAATGGATGTCGATACGAGGAGAGAGCTGCAAGAGTTGATGGAAGCAAGGGAGGCAGGAATGGCATTCATAATGGGACATTCATACGTGAAGGCAAAGAAAGGATCAGAGGCCAAAACCGGTCAACTTTCTTTTCCTCTTTACTCCACTCTTCCTCTATATGTGTACCTTCAATCCCCCAAGTTTTTGAGGGTTTTCCCTCCTCAATCTTCCTCATTCTCGACAATGGCCAGGATTTCCCTCGCTTTTGCTCTCGTTTTTCTTCTTCTTTTTGGTGGGGTTTCTCCTGCTTCTGCTTCGCCTCCTGGAAAAATTGTTCGTGGGGTTGTTTCCAATGTGGTTTCTTCTCTTGTGAAGAAGTTATGGTCGATGAAATCCACTGCCAAAACTGCTGTTTCCAGCCGTTCGATGATGAAATTTGAGAGTGGATATACGGTTGAGACGGTGTTCGATGGCAGTAAGCTGGGAATCGATCCTTATTCGGTCGAGATGTCGCCTAGTGGGGAGCTGCTGATCTTAGATGCTGAAAACAGTAACATCTATAAGATCTCAATGCCATTGTCTCGATATAGCAGACCAAAACTGGTTTCAGGATCTGCAGAAGGATACCCCGGACATGTTGATGGCCATCCAAGAGAAGCGAGGATGAATCATCCGAAAGGGCTTACTTTGGATGAAAGGGGAAATATATACATTGCAGATACAATGAATATGGCTATCAGGAAGATTAGTGACACTGGGGTTACAACTATTGCTGGTGGAAGATGGAACCAAGGGAGTGGTCATATTGATGGTCCTAGTGAAGATGCAAAGTTCTCAAATGATTTTGATGTTGTTTATGTGGGAAGTAGCTGCTCTCTTTTGGTCATAGACAGAGGAAACAAGGCGATTCGAGAGATTGAACTTAACTACGACGACTGCAATACTCAATACGCTGATAGTCTCAACTTGGGGGTAGTGTTGTTGGTCGCTGCTGGTTTGTTCGGCTATCTGCTTGCTCTGCTCCAACGTAGAGTGCAAGCAGTGTTTTCTTCACCAAAGGATGAGGATGTAAAAAGTCATCAAATGAAGAAGGCTGCACAAGCTGCCCAATATCAAAGACCTCCTCTCAAGTCAGTCAGGCCTTCCTTGATTCCGAGTGAAGATGAACCAGAGAAACTGGAGGAAGGATTCTTCGGTTCGCTTGGGAGGCTTTTCGTCAACAGTGGCTCGTCTGTAGCCGATATTGTTGGGGGATTTTTGCCTGGATTTCGAAGGAAGCCTCTCAATAACCAGATCCATCAGCAGTTTCAACAAGTCAACAGACATCCAAACTCTTGGCCCTTGCAAGAAAGTTTTGTGATTCCAGATGAAGACGAGCCACCATCCATTGAAACGAAAACTCCGACAATAAAAAAAACGTATCCATTTATGACACAAGACCTCGATCGATCTCATCAGTTCAAGCCAAACAGAAACTACTTCAATGGGTGGGACAATGGTGGTGAATTCCATCAACAGCAGCAACAGCCGCAGCAGATACATCATCAACAGCAGCAGATACAGCAGCAGCCGCAGCAGCAACAAATACAGCAGCAGCAGCAGCAGATGCAACATCATCAGCAGCATCATTATCAGCAATATCAGCAATATCACCATCGACAATACTCTGCAGGCCCGACAACATACTACGAGAAGAATTGCGAGACGAAAGAAATTGTGTTTGGTGCAGTTCAAGAACAAGATGGACGCCGTGAAGCTATGGTGATCAAGGCTGTTGATTATGGAGATCCAAGATATAACCATCACAACATTCGAGCTCGGTACAACTATACTGGTAATCCCAACTCTTATTGA 3927 43.85 MDPNLIWGYPEKRDSWRTIFTLAYQALGVVYGDLSTSPLYVYKSTFAKNLQHSETNEEVYGVLCFVFWTLTLIPLLKYVFIVLKADDNGEGGTFALYSLLCRHARLSSLPNQQLADEELSAYKRDTPEPTSNFSFSSCLKATLEKCKVLQRILLVLALIGTCMVIGDGVLTPAISVFSAVSGVELSMAKEHHQYIKVPLACAILVFLFALQHYGTHRVGFLFAPVVIVWLLCISAIGLYNIFYWNPLVYKALSPYYMYKFLKKTKKQGWMALGGVLLCITGSEAMFADLGHFSHFSIKLAFTFVVYPSLVLAYMGQAAYLSKHHNLDNDYRIGFYVSVPEKVRWPVLAIAILAAVVGSQAIITGTFSIIKQCSSLGCFPRVKIVHTSSKIHGQIYIPLINWILMILCLAVTIGFRETERLGNAAGLAVITVMLVSTCLMSLVIVLCWHKSVLLAIAFLVFSGSIEALYFSASLMKFFEGAWVPIALSLTFLVVMYVWHYGTLKKYEADVENKVPINWLLGIGPKIGIVRVRGIGLVHTELVSGIPSIFSHFVTNIPAFHEILVFLCIKSVTMPHVRPEERFLVGRVGPKEYRLYRCIARYGYRDVHKDDLEFERDLACSIAEFIRSEKTECNTFRHNDLDDNDDNERMRVIGTSSTQLNGIQMCENESCSLPIIDSSEIRSERLRRKRVRFVVPESTKMDVDTRRELQELMEAREAGMAFIMGHSYVKAKKGSEAKTGQLSFPLYSTLPLYVYLQSPKFLRVFPPQSSSFSTMARISLAFALVFLLLFGGVSPASASPPGKIVRGVVSNVVSSLVKKLWSMKSTAKTAVSSRSMMKFESGYTVETVFDGSKLGIDPYSVEMSPSGELLILDAENSNIYKISMPLSRYSRPKLVSGSAEGYPGHVDGHPREARMNHPKGLTLDERGNIYIADTMNMAIRKISDTGVTTIAGGRWNQGSGHIDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIELNYDDCNTQYADSLNLGVVLLVAAGLFGYLLALLQRRVQAVFSSPKDEDVKSHQMKKAAQAAQYQRPPLKSVRPSLIPSEDEPEKLEEGFFGSLGRLFVNSGSSVADIVGGFLPGFRRKPLNNQIHQQFQQVNRHPNSWPLQESFVIPDEDEPPSIETKTPTIKKTYPFMTQDLDRSHQFKPNRNYFNGWDNGGEFHQQQQQPQQIHHQQQQIQQQPQQQQIQQQQQQMQHHQQHHYQQYQQYHHRQYSAGPTTYYEKNCETKEIVFGAVQEQDGRREAMVIKAVDYGDPRYNHHNIRARYNYTGNPNSY 1308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18329852 18338611 + CmaCh04G027160.1 Cma04g02716 293797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02716 1308 MobiDBLite consensus disorder prediction 1184 1237 - -
Cma04g02716 1308 PANTHER POTASSIUM TRANSPORTER 6 11 734 - -
Cma04g02716 1308 SUPERFAMILY NHL repeat 842 999 - -
Cma04g02716 1308 TIGRFAM kup: potassium uptake protein 22 734 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g02716 1308 MobiDBLite consensus disorder prediction 1043 1079 - -
Cma04g02716 1308 Gene3D - 810 998 IPR011042 -
Cma04g02716 1308 Pfam K+ potassium transporter 24 604 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g02716 1308 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 11 734 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02716 Cma14g00637 CCT
Cma04g02716 Cma11g01418 CCT
Cma04g02716 Cma11g01418 ECH
Cma04g02716 Cma14g00637 ECH
Cma04g02716 Cma15g00326 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00666 Cma-Chr4:3396771 Cma04g02716 Cma-Chr4:18329852 4.07E-70 dispersed
Cma04g02716 Cma-Chr4:18329852 Cma15g00326 Cma-Chr15:1513622 0 dispersed
Cma11g01418 Cma-Chr11:9334841 Cma04g02716 Cma-Chr4:18329852 0 wgd
Cma14g00636 Cma-Chr14:3155964 Cma04g02716 Cma-Chr4:18329852 5.36E-121 wgd
Cma15g00325 Cma-Chr15:1508929 Cma04g02716 Cma-Chr4:18329852 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02716 K03549 - csv:101218141 1328.54