Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02720 ATGGCGGGAAGTTACTTTATGGAAGGCGTTCTGCCATTTCCGGCGATGGTAACCATGGAGTGCATCAACGTCGGTCTCAACACTCTTTTCAAAGCCGCCACCGCCTCCGGCATGAGCCACCACGTCTTCATCGTTTATTCTTACTCCCTCGCCGCCTTCTTCCTCCTCCCTTCTCCCTTCATCTCTCGCAGATCCACGCGGCTTCCACCGCTCAATTTCTCTATACTCTCGAAGATCGCTCTTCTCGGACTCATCGGTTCTTGTTCGCAGATAATGGGATACACGGGAATCAATTACAGTTCTCCGACTCTTGCTTCCGCCATCAGCAACCTTGTTCCTGCTTTCACTTTCATTCTCGCCATCATTTTCAGGATGGAGAAAGTGGTGATGAAGAGCAGTAGCAGTCAAGCAAAAGTAATGGGCACCATAATATCCATATCAGGTGCATTTGTAGTTACTCTTTACAAGGGTCCAAGGGTCATATTCTCTTCACCACCCACATCTCTTTCCCTCCATCATCCACTTACCTCTTCAGATTCTAATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATATATCTTGGTTCCACTTTGGTACATTGTTCAGACAAAAATAATGAAGGAATACCCAGAAGAGGCAACAGTGATCTTCTTCTACAACTTAACTGTGGCCTTCATAACTGCAGTTGTAGGTGTGATCTTAGAGACAGATCCAAGTACTTGGATTTTGAGGCAAAATACAGCGTTGGCCTCTGTTTTATGCTCCGGACTTTTTGGATCATGTTTGAATAATACAGTTCATACATGGGCACTCCGGTTGAAAGGGCCGGTGTTTGTAGCGATGTTTAAGCCATTGTCGATTGTCGTCGCCATTGTAATGGGTGTTCTGTTTCTTGGTGATTCTCTATATCTTGGAAGTCTTATTGGAGCATCCATAATTTCCATAGGGTTTTATACTGTAATGTGGGGAAAAACAAGAGAAGAAGTGGGCGATGAAGAAGAAAAGGAAAGGCATGGCCATAATGTTAGTGATGACAAGGAGCCACATGAAGATCAGAAAGTACCTCTTCTTGGAAACTATAAGACACAGAGATACAGTTCAGATCATGTATGA 1116 44.62 MAGSYFMEGVLPFPAMVTMECINVGLNTLFKAATASGMSHHVFIVYSYSLAAFFLLPSPFISRRSTRLPPLNFSILSKIALLGLIGSCSQIMGYTGINYSSPTLASAISNLVPAFTFILAIIFRMEKVVMKSSSSQAKVMGTIISISGAFVVTLYKGPRVIFSSPPTSLSLHHPLTSSDSNWVIGSLLLTAEYILVPLWYIVQTKIMKEYPEEATVIFFYNLTVAFITAVVGVILETDPSTWILRQNTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSLIGASIISIGFYTVMWGKTREEVGDEEEKERHGHNVSDDKEPHEDQKVPLLGNYKTQRYSSDHV 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18350626 18354110 + CmaCh04G027200.1 Cma04g02720 293801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02720 371 PANTHER WAT1-RELATED PROTEIN 9 338 - -
Cma04g02720 371 PANTHER WAT1-RELATED PROTEIN 9 338 IPR030184 GO:0016021|GO:0022857
Cma04g02720 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
Cma04g02720 371 MobiDBLite consensus disorder prediction 329 355 - -
Cma04g02720 371 MobiDBLite consensus disorder prediction 329 371 - -
Cma04g02720 371 Pfam EamA-like transporter family 24 153 IPR000620 GO:0016020|GO:0016021
Cma04g02720 371 Pfam EamA-like transporter family 194 322 IPR000620 GO:0016020|GO:0016021
Cma04g02720 371 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 327 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02720 Cma15g00320 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00292 Cma-Chr4:1449636 Cma04g02720 Cma-Chr4:18350626 3.32E-66 dispersed
Cma04g01584 Cma-Chr4:8027002 Cma04g02720 Cma-Chr4:18350626 4.16E-69 dispersed
Cma04g02720 Cma-Chr4:18350626 Cma04g02624 Cma-Chr4:17910496 1.29E-58 dispersed
Cma15g00322 Cma-Chr15:1491965 Cma04g02720 Cma-Chr4:18350626 9.63E-49 dispersed
Cma11g01416 Cma-Chr11:9307080 Cma04g02720 Cma-Chr4:18350626 1.43E-09 wgd
Cma15g00320 Cma-Chr15:1487220 Cma04g02720 Cma-Chr4:18350626 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02720 - - csv:101208880 593.964