Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g02721 | ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCTAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTTTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCCCAGTTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCGTGGATTCCCCATTGCTCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA | 552 | 47.1 | MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEYRLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 18355087 | 18355638 | + | CmaCh04G027210.1 | Cma04g02721 | 293802 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g02721 | 183 | SUPERFAMILY | LigT-like | 5 | 155 | IPR009097 | - | |
| Cma04g02721 | 183 | Pfam | 2'-5' RNA ligase superfamily | 41 | 155 | - | - | |
| Cma04g02721 | 183 | PANTHER | - | 1 | 182 | - | - | |
| Cma04g02721 | 183 | Gene3D | Cyclic phosphodiesterase | 5 | 178 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02721 | Cma-Chr4:18355087 | Cma15g00320 | Cma-Chr15:1487220 | 7.56E-124 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g02721 | - | - | csv:101208638 | 350.132 |