Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02725 ATGGCCTTTCTCCTTCTCCTTTTCCTCTCCGCCTTCACTCCTTCCGCCACTGCCACTATCTTCGCCGACTACTACCGCAATTCCTGTCCTGCATTCTCTCAGATCATCCGCGACACCGTCACCAACAAGCAAATCACCACCCCGACCACCGCTGCCGCCACCCTCCGCCTCTTCTTCCACGACTGTCTCCCCAACGGCTGCGATGCCTCTATCCTCATCTCCTCCACCCCTTTCAACTCCGCCGAGCGCGACGCTGACATCAACCTCTCCCTCCCCGGCGACGCCTTCGACGTCGTCGTCCGAGCCAAAACCGCCCTCGAACTCTCCTGCCCCAACACCGTCTCCTGTGCTGACATTCTAGCCACCGCCACTCGCGACCTCCTCACTATGGTTGGCGGCCCGTACTACACCGTCTTTCTCGGCCGAAAAGACGCGAAAATTTCCAGAGCCGCCGCCATTGAAGGCACTCTGCCCAGACCCTCCATGAGTGTCTCGGAGATCATTGGAATGTTCGGCTCCAAAGGATTTTCAGTTCAGGAAATGGTGGCGTTAAGCGGCGCTCATTCGATTGGCTTCTCGCATTGCAAGGAGTTCACGTCTGGGATCTTCAATTACACCAAATCCCCGCCCTACGACAGCCATTATAACCCTAGATTCGCATTAGGGTTACAGAGAGCTTGCGCTGATTACCAGAAGAATCCGACTCTGTCCGTTTTCAACGACATAATGACGCCGAACAAATTCGACAACATGTATTTCAAGAATTTGCAGAAGGGGTTAGGGGTTCTGAAATCCGACGGCGGATTTTACAGCGATTCAAGAACACGGCCGTGGGTGGAGAAATACGCTGCAGATGAGAGAGCCTTCTTCGACGCGTTTTCTCGAGCAATGGTGAAGCTCGGTGGCTATGGCGTCAAACTGGGAAACCAAGGAGAAATTAGACGCAGGTGCGATGCCTTCAACTGA 966 54.55 MAFLLLLFLSAFTPSATATIFADYYRNSCPAFSQIIRDTVTNKQITTPTTAAATLRLFFHDCLPNGCDASILISSTPFNSAERDADINLSLPGDAFDVVVRAKTALELSCPNTVSCADILATATRDLLTMVGGPYYTVFLGRKDAKISRAAAIEGTLPRPSMSVSEIIGMFGSKGFSVQEMVALSGAHSIGFSHCKEFTSGIFNYTKSPPYDSHYNPRFALGLQRACADYQKNPTLSVFNDIMTPNKFDNMYFKNLQKGLGVLKSDGGFYSDSRTRPWVEKYAADERAFFDAFSRAMVKLGGYGVKLGNQGEIRRRCDAFN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18364076 18365041 + CmaCh04G027250.1 Cma04g02725 293806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02725 321 PANTHER - 3 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 Gene3D - 23 321 - -
Cma04g02725 321 SUPERFAMILY Heme-dependent peroxidases 22 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cma04g02725 321 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601|GO:0042744
Cma04g02725 321 ProSitePatterns Peroxidases active site signature. 51 62 IPR019794 GO:0004601
Cma04g02725 321 ProSiteProfiles Plant heme peroxidase family profile. 19 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 PANTHER PEROXIDASE 31 3 321 - -
Cma04g02725 321 Pfam Peroxidase 40 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma04g02725 321 Gene3D Peroxidase, domain 2 158 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02725 Cma-Chr4:18364076 Cma11g01161 Cma-Chr11:6725930 3.61E-127 dispersed
Cma10g00148 Cma-Chr10:676861 Cma04g02725 Cma-Chr4:18364076 2.08E-123 wgd
Cma11g01064 Cma-Chr11:5836905 Cma04g02725 Cma-Chr4:18364076 2.71E-164 wgd
Cma13g00904 Cma-Chr13:7246240 Cma04g02725 Cma-Chr4:18364076 6.84E-134 wgd
Cma14g00629 Cma-Chr14:3113042 Cma04g02725 Cma-Chr4:18364076 1.74E-166 wgd
Cma18g00148 Cma-Chr18:760016 Cma04g02725 Cma-Chr4:18364076 1.46E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02725 K00430 - csv:105435603 545.814