Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02726 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTCCATAGACATACTCAACCTAATTGGGCTTTCGAGAAAAATTCTCCATCGGTTGCAGTTTCAGAGATAACCAGTAGTCCTACACGGAAATGGCGGATCTTCAGTCGGTCGTCTTCTTCCCCCTTTTCGTCCAAACCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCGGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGCCACACATTCGAGGCCGCCTGTGTTCAAGTTTGTAAAGATTTCGGCTTCAAGCCTACTTTGTTAGATGGTTCGAAGCCGGATTTCACCTCTGTAATCCCGAATCTGGCTCTGAAATCCACCATTTTCAACTGGTGTAAAAACTCGTCCTCTAAACCCCCAAAACCACTCGATTTCTCCTCCGCCGAAAAGCTCGTTGGTAAGTTCATGGCAGACCACAGGAAAAGCGACGACGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGACTCAACCACACCGCCACCGAGGTCACTCGTCGGGCATCTCATTTCTACTCGAGCTCCGATCAATCTGTCGCCGCCGTTCCGAGTCTACCCCTTCCTCTCGCGACTCGACCGAGTTGTTCTTCTTCTGAAATTGAGATCTCTACTCTGAACTCCACTGAAGAAGAAGAGATCCTCACGAAGCTCAAAAGCCCTCAGGTTACTGACATTGAAGAGGGTGTGGTTACGCTGAGAAAAATCACGAGAATTCGAGAGGACACTAGGCTTTATCTCTGTTCCCCTTTGATTCTCTCTGCTCTTCGGTCTCTTATCGTCTCAAGGTACAGCAGCATTCAGGTGAATTCAGTTGCAGCACTGGTGAATCTGTCCTTAGAGAATATGAACAAGGTCAAGATCGTACGGTCGGGATTTCTCCCCAATTTGATCGATATTCTTAAAACGGGTTCCCCGGAGGTTCAGGAACATGCCGCCGGTGCCATTTTCAGCTTAGCTCTCGACGACGACAATAAGACGGCGATCGGCGTATTGGGTGCTCTGCCGTCATTGATACGGCTGTTGGTATCCCACTCGGAGCAGACCCGACACGACTCGGCTCTTGCTCTGTACCACTTATCGCAAGTTCAGAGCAACCGTTCGAAGCTAGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGGATGGTAAAATCCGGCCTCATGGTCGGCCAGATTTTTCTGATATTGTGTAATTTAGCAGCGTGTTTCGAGGGTCGTGCGGCGTTGTTGAACTCCGGCGCGGTGGAATGTTTAGTGGGGATGTTAAGAGAGAACGAGTTGGACTCCGAGTCGACACGGGAGAGTTGCGTGGCGGTTCTGTTAGAACTGAGTTACAGTAATTTGCGGTTCAAAGGTCTGGCCAAAACCGCCGGAGCAATGGAGGTTTTCACGGCGGTGGAGGAAAACGGAAGTGAGAGATTACAAGAGAAGGTGAAGAGGATCATGGAGTCCATGAAAGTCAGAGAGGAAGAAGCTGAGAATGTTAATTGGGAGGAATTGCTAGACTCGGGCTCTTTCAGCAGCCAAGCTCGGTGTCGACTGGTCGCCGGAATGGATAGGTCCTCCGCCAACTCGTCCGAGCTCTGA 1638 49.82 MEFQEGLMKFMVHRHTQPNWAFEKNSPSVAVSEITSSPTRKWRIFSRSSSSPFSSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDFGFKPTLLDGSKPDFTSVIPNLALKSTIFNWCKNSSSKPPKPLDFSSAEKLVGKFMADHRKSDDELIQGVAENPVVRLNHTATEVTRRASHFYSSSDQSVAAVPSLPLPLATRPSCSSSEIEISTLNSTEEEEILTKLKSPQVTDIEEGVVTLRKITRIREDTRLYLCSPLILSALRSLIVSRYSSIQVNSVAALVNLSLENMNKVKIVRSGFLPNLIDILKTGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALPSLIRLLVSHSEQTRHDSALALYHLSQVQSNRSKLVKLGSVPVFLGMVKSGLMVGQIFLILCNLAACFEGRAALLNSGAVECLVGMLRENELDSESTRESCVAVLLELSYSNLRFKGLAKTAGAMEVFTAVEENGSERLQEKVKRIMESMKVREEEAENVNWEELLDSGSFSSQARCRLVAGMDRSSANSSEL 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18365399 18367036 - CmaCh04G027260.1 Cma04g02726 293807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02726 545 SUPERFAMILY ARM repeat 229 503 IPR016024 -
Cma04g02726 545 SUPERFAMILY RING/U-box 55 136 - -
Cma04g02726 545 Pfam Armadillo/beta-catenin-like repeat 300 337 IPR000225 GO:0005515
Cma04g02726 545 Coils Coil 488 508 - -
Cma04g02726 545 Pfam U-box domain 62 132 IPR003613 GO:0004842|GO:0016567
Cma04g02726 545 Gene3D - 219 404 IPR011989 -
Cma04g02726 545 Gene3D - 405 502 IPR011989 -
Cma04g02726 545 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 40 533 - -
Cma04g02726 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Cma04g02726 545 PANTHER U BOX DOMAIN-CONTAINING 40 533 - -
Cma04g02726 545 CDD RING-Ubox 67 97 - -
Cma04g02726 545 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Cma04g02726 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 392 IPR000225 GO:0005515
Cma04g02726 545 SMART arm_5 339 379 IPR000225 GO:0005515
Cma04g02726 545 SMART arm_5 298 338 IPR000225 GO:0005515
Cma04g02726 545 SMART arm_5 257 297 IPR000225 GO:0005515
Cma04g02726 545 SMART arm_5 419 462 IPR000225 GO:0005515
Cma04g02726 545 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Cma04g02726 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 346 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02726 Cma15g00312 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02726 Cma-Chr4:18365399 Cma11g00188 Cma-Chr11:963788 1.84E-164 dispersed
Cma10g00149 Cma-Chr10:682222 Cma04g02726 Cma-Chr4:18365399 8.50E-165 wgd
Cma13g00905 Cma-Chr13:7247896 Cma04g02726 Cma-Chr4:18365399 3.00E-146 wgd
Cma15g00312 Cma-Chr15:1439680 Cma04g02726 Cma-Chr4:18365399 0 wgd
Cma18g00146 Cma-Chr18:754216 Cma04g02726 Cma-Chr4:18365399 1.45E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02726 - - cmax:111489531 852.047