Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02741 ATGAAAATCTCCTCCAGCTTCCTTCTCTATCATCTTCTTCTTCTTCTACTACTTTCTGCTTCTCTGTTTTCTTCTGCAGTTCAGGAAGACGACATAAGATGTCTTCGAGGGGTTAAGGATTCGTTCGTTGATCCTCTTGGGAAGCTCAGTTCCTGGGATTTCAAGAACACGTCGGTCGGAAATCTTTGCAGTACATTTGTCGGACTGTCCTGCTGGAACGACCGGGAGAATCGCATTCTGAGCCTTGAGCTCAGAGATATGGCGCTCTCTGGTTCCCTTTCTGAGGATTTGCAGTACTGTGTGAGCCTGCAGAGACTGGATCTGTCTGGTAATTCCTTTTCCGGCGCGATTTCGCCGCATATTTGTAAGTGGCTTCCGTATTTGGTTAATTTGGATTTGTCCAACAATCAATTTTCCGGCCCTATTCCGGCTGATCTCGCCGGATGTTCTTATCTGAATTCGTTAATGTTGGCTGATAATGCGCTTTCGGGTACGATACCAGTTGAGCTTACGAGTTTGAGTAGGCTTAATAAATTTTCTGTTGCGAACAATCATCTCACTGGTTCGATTCCCGAATCTTTTAATAAATTTGGGAGTGAGGATTTTGATGGGAACAGTGAGTTATGTGGAGGGCCTGTTGGATCGAGCTGTGGTGGGTTGAGCAAGAAAAATCTAGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCAGCTTCCCTGTTATTAGGTTTTGGGTTATGGTGGTGGTATCATTCTAGGATGAACATGAAGAAAAGAAGGGGATACAGGGATGGGAGTGATGGGGATTGGGCTGATAGATTAAGAGCCTATAAGCTAGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTAGCTGATTTGTTAGCTGCTACTAACAATTTCAATGGTGAAAATATAATGGTTTCTTCTAGAACTGGAACTACTTATAGAGCTGCTCTTCCAGATGGCTCTGTGCTTGCTATAAAGCGGCTCAATACCTGCAAGCTTGGTGAGAAGCTGTTTCGGACGGAGATGAACTGGTTAGGATCGTTGAGGCACCCGAATTTGACACCCCTTTTGGGATTCTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCTAATGGGACTTTGGCTTCTTTGTTACATGGAAATGGTGAGATATTGGATTGGGCAACTAGGTTTAGGATTGGTTTGGGTGCAGCTAGGGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGATGAATATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTAATGGCTTCGGATTCTCACGACAGTAGTTTCGTTAATGGAGATTTAGGGGAGCTCGGTTACATTGCTCCCGAATATCCCAGCACCATGGTTGCTTCTCTAAAAGGGGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGGTCACTGGCCAAAAACCTCTAGAAGTCACTAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTAGTTCGGGTCGAATCAAGGACGTTATCGATAAAAGTCTTTGTGGAAAAGGGAACGATGACGAAATCTTGCAACTTCTGAAAATTACAATGAACTGTATTGTTTCTAGGCCCAAGGACAGGTGGTCTATGTATCAGGTTTATCAGTCAATGAAATCAATGGCTAAGGACTACAGTTTCTCTGAACCAGACGATGCGTTCCCACTTTTACTCGGCAAGGGAGATAACGAACCCGCGTAG 1812 43.76 MKISSSFLLYHLLLLLLLSASLFSSAVQEDDIRCLRGVKDSFVDPLGKLSSWDFKNTSVGNLCSTFVGLSCWNDRENRILSLELRDMALSGSLSEDLQYCVSLQRLDLSGNSFSGAISPHICKWLPYLVNLDLSNNQFSGPIPADLAGCSYLNSLMLADNALSGTIPVELTSLSRLNKFSVANNHLTGSIPESFNKFGSEDFDGNSELCGGPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKKRRGYRDGSDGDWADRLRAYKLVQVSLFQKPLVKVKLADLLAATNNFNGENIMVSSRTGTTYRAALPDGSVLAIKRLNTCKLGEKLFRTEMNWLGSLRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLASLLHGNGEILDWATRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDDEYDARIMDFGLARLMASDSHDSSFVNGDLGELGYIAPEYPSTMVASLKGDVYGFGVVLLELVTGQKPLEVTKAEEGYKGNLVDWVNQLSSSGRIKDVIDKSLCGKGNDDEILQLLKITMNCIVSRPKDRWSMYQVYQSMKSMAKDYSFSEPDDAFPLLLGKGDNEPA 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18437183 18438994 + CmaCh04G027410.1 Cma04g02741 293822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02741 603 SUPERFAMILY L domain-like 28 205 - -
Cma04g02741 603 Gene3D Ribonuclease Inhibitor 28 219 IPR032675 -
Cma04g02741 603 ProSiteProfiles Protein kinase domain profile. 304 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02741 603 Gene3D Phosphorylase Kinase; domain 1 265 378 - -
Cma04g02741 603 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515
Cma04g02741 603 Pfam Protein tyrosine and serine/threonine kinase 329 573 IPR001245 GO:0004672|GO:0006468
Cma04g02741 603 Pfam Leucine rich repeat N-terminal domain 29 72 IPR013210 -
Cma04g02741 603 Gene3D Transferase(Phosphotransferase) domain 1 379 590 - -
Cma04g02741 603 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 597 - -
Cma04g02741 603 PANTHER RECEPTOR-LIKE PROTEIN 55 7 597 - -
Cma04g02741 603 SUPERFAMILY Protein kinase-like (PK-like) 281 574 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02741 Cma-Chr4:18437183 Cma18g01235 Cma-Chr18:9702739 4.62E-06 dispersed
Cma17g01324 Cma-Chr17:8922872 Cma04g02741 Cma-Chr4:18437183 5.34E-177 transposed
Cma15g00297 Cma-Chr15:1391433 Cma04g02741 Cma-Chr4:18437183 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68554 PF07714 PK_Tyr_Ser-Thr 7.30E-30 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02741 - - cmos:111445255 1036.94