Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02754 ATGGGTTTGGCACCTAATGGCTCGAAGGTCGAGACGTGGATTGAGGGCAAGTCAAGAACAGCAAGCGAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAACGAGTTGGAGAAGGCGGAGACTGGATGTTGGGTTAGGTTGAAGTTCATTAGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTTTAAGTGGATCAAAGGTCGATAGCTTCATTAGTGGCACCACTACCCATTGCGATAGTAAATCTAAACTCGATGAAAAGAAAGTTATTCTGTTTACTGCATTGGGGTCATCAGCGACTACTGATAATGCTGAAAGTAGCTCGTCCACGCCCAAGCTTAGTGCCGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCAGACCTGAGAGCCTTCTCGGCGAGGGGGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCGGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGACGGTCTACAAGGTCATAAAGAGTGGATGGCTGAAGTTAACTTCCTTGGTGATCTCAACCATTCTAATCTTGTGAGATTAATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTACGAGTTCATGCCTCGTGGAAGTTTGGAGAACCACCTCTTCAGAAGGCCCTTGCCACTTCCTTGGTCCATTAGAATGAAGATTGCACTTGGTGCTGCTAAAGGCCTTGCGTTTCTTCATGAAGAAGCTGAAAGACCAGTGATCTATCGCGATTTTAAAACGTCTAATATTTTATTAGATGCGGATTACAACGCTAAACTCTCGGATTTTGGACTTGCAAAAGACGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACCTATGGTTATGCAGCTCCAGAATATGTGATGACTGGGCATTTGACATCAAAAAGCGATGTGTACAGTTTTGGAGTTGTCTTGCTCGAAATGCTAACGGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTCGAATGGGCTAGACCCCTACTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCCCGCCTTGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCAGAACTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGTCAGACCTGTGATGAGTGAAGTTGTAGAAACTTTAAAACCTTTGCCAAACCTCAAGGACATGGCTAGTTCTTCCTATTACTTCCAAACCATGCAAGCAGACCGTGCCAGGTCCAATCCCAATGCTAAAAGTGTCGTTCGTACCCAGTCGATGTTGGTGGCAAGGAACGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGTCCTCATGCTTCTCCTTATAATTATCCTCAGCAGTCACCAAAACCTGACAGGAGACAACCTCAATAA 1491 44.53 MGLAPNGSKVETWIEGKSRTASEKKKKKKKKENELEKAETGCWVRLKFIRSCIPSRSKVDSSLSGSKVDSFISGTTTHCDSKSKLDEKKVILFTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKVRPVMSEVVETLKPLPNLKDMASSSYYFQTMQADRARSNPNAKSVVRTQSMLVARNGQHIRSLSSPNGPHASPYNYPQQSPKPDRRQPQ 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18515247 18519717 + CmaCh04G027540.1 Cma04g02754 293835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02754 496 MobiDBLite consensus disorder prediction 16 33 - -
Cma04g02754 496 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 69 486 - -
Cma04g02754 496 Coils Coil 14 41 - -
Cma04g02754 496 Pfam Protein tyrosine and serine/threonine kinase 143 419 IPR001245 GO:0004672|GO:0006468
Cma04g02754 496 MobiDBLite consensus disorder prediction 463 496 - -
Cma04g02754 496 ProSitePatterns Protein kinases ATP-binding region signature. 145 177 IPR017441 GO:0005524
Cma04g02754 496 MobiDBLite consensus disorder prediction 1 33 - -
Cma04g02754 496 ProSiteProfiles Protein kinase domain profile. 139 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02754 496 MobiDBLite consensus disorder prediction 463 489 - -
Cma04g02754 496 Gene3D Transferase(Phosphotransferase) domain 1 225 442 - -
Cma04g02754 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Cma04g02754 496 SUPERFAMILY Protein kinase-like (PK-like) 116 419 IPR011009 -
Cma04g02754 496 Gene3D Phosphorylase Kinase; domain 1 114 224 - -
Cma04g02754 496 PANTHER OS01G0588500 PROTEIN-RELATED 69 486 - -
Cma04g02754 496 CDD STKc_IRAK 145 422 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02754 Cma15g00284 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02754 Cma-Chr4:18515247 Cma15g00284 Cma-Chr15:1345263 0 dispersed
Cma18g01174 Cma-Chr18:9397046 Cma04g02754 Cma-Chr4:18515247 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68555 PF07714 PK_Tyr_Ser-Thr 2.30E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02754 - - cmos:111462942 970.304