Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02756 ATGGCTTCCCCTCATCATTCCCATAGCTTCATGTTCCAATCACGCCCCGCCGACCACCATGACTACGCCCCCACTGCCACTGCTTCCTTCAACAACATCCCCTTCTGCCCTCCTCACCTCTACTTCCACGATGGGGTTGTCCCGTTGATGATGAAGAGATCCATGTCGTTTTCCGGCGTCGAAAACGGCTGCGAGGAAGTTAACGGAGACGAGGGGTTGTCGGACGACGGGTCGGCATTGGGAGAGAAGAAGAAGCGGCTTAATTTAGAGCAAGTGAAGGCCTTGGAGAAAAGCTTTGAGCTGGGAAATAAGCTCGAGCCTGAGAGAAAATTGCAGCTGGCTAAAGCTCTGGGGCTGCAGCCGAGACAGATTGCTATTTGGTTCCAGAACAGAAGGGCCAGGTGGAAGACCAAGCAATTGGAGAGAGATTACGACGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCCGACAATGATGTCCTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTGTTAGCATTAAAAACCAAAGACTCCGGCGAGGTAGCGGCGGGCGGCAGCGCCACCGTGAACTTAAAGAAAGAAAACGAACGCTGCTGGAGTAGTGACAATAGTTGTGACATCAACCTGGAGATCTCACGAACACAAGCACCAATAACAAGTAACGGTAGCAACGGCGGAAGAGGATGTTCCCAACCTGGAATCAAGGACCTGTTCCCTTCGGCAGCGTTCCGGTCCGCCGCCATAACGCAGCTGCTGCAACACGGGTCTTCTAGATCAACCGTCAATCATTCGCCGGTGATTCAAGAAGAAAGCTTCACTCAAATGTTCAATGGGATCGAAGAACAACAACAAACTACAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 915 50.27 MASPHHSHSFMFQSRPADHHDYAPTATASFNNIPFCPPHLYFHDGVVPLMMKRSMSFSGVENGCEEVNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKLQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEVAAGGSATVNLKKENERCWSSDNSCDINLEISRTQAPITSNGSNGGRGCSQPGIKDLFPSAAFRSAAITQLLQHGSSRSTVNHSPVIQEESFTQMFNGIEEQQQTTAAGFWPWSSDQNSHFH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18528070 18529551 - CmaCh04G027560.1 Cma04g02756 293837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02756 304 Pfam Homeobox associated leucine zipper 138 178 IPR003106 GO:0006355|GO:0043565
Cma04g02756 304 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Cma04g02756 304 Coils Coil 130 171 - -
Cma04g02756 304 Gene3D - 76 145 - -
Cma04g02756 304 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Cma04g02756 304 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Cma04g02756 304 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Cma04g02756 304 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Cma04g02756 304 CDD homeodomain 83 139 IPR001356 GO:0003677
Cma04g02756 304 SMART HOX_1 81 142 IPR001356 GO:0003677
Cma04g02756 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 304 IPR045224 GO:0003700
Cma04g02756 304 SUPERFAMILY Homeodomain-like 77 140 IPR009057 -
Cma04g02756 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 304 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02756 Cma15g00281 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01643 Cma-Chr4:8287930 Cma04g02756 Cma-Chr4:18528070 1.22E-81 dispersed
Cma04g02756 Cma-Chr4:18528070 Cma07g00559 Cma-Chr7:2415764 1.54E-38 dispersed
Cma07g00874 Cma-Chr7:4111648 Cma04g02756 Cma-Chr4:18528070 2.84E-28 dispersed
Cma13g00928 Cma-Chr13:7361934 Cma04g02756 Cma-Chr4:18528070 8.32E-37 wgd
Cma15g00281 Cma-Chr15:1338846 Cma04g02756 Cma-Chr4:18528070 0 wgd
Cma18g01164 Cma-Chr18:9324568 Cma04g02756 Cma-Chr4:18528070 1.67E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34984 PF00046 Homeodomain 4.70E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02756 K09338 - csv:101212093 529.635