Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02760 ATGACCTCCGCCGAGGCTTCAATCAAGCCCAATTCTGCATCCACTTTCAAGAACCATGCTGATTCTACCAAAGCCCCCTCTGATCCACCCAACGCGCTCTCTGCCAAGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTTGTTTCTGTCCCTCGTGAAAACGAGCGTGTCTTCTACTTCCCTCAGGGCCACATTGAACAGGTGGAAGCATCAACTAATCAAGTGGCGGACCAACAGATGCCTGTTTATGACCTTCCATCCAAAATCCTCTGCCGCATTATTAATGTGTGCTTAATGGCAGAGCCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATTCTGTGGACAAGGAACCACCTCCTCCTCCTCCACGAAGATTTCATGTGCATTCTTTTTGCAAGACTCTGACTGCATCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGGCGCCATGCTGATGAATGTCTTCCTCCACTGGACATGTCACAACAGCCTCCTACTCAGGAGTTAGTTGCAAAGGATTTGCTTGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGAGAGAATAGAGAACTTCGCGTTGGTGTTAGGCGTGCCATGAGACAGCATGGCAATGTCCCCTCATCGGTCATATCTAGCCATAGTATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACAATGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTTGTTGTTCCATATGACCAGTATATGGTGTCTATTAAGAAGAGCTACACCATAGGGACGAGGTTCAAAATGAGGTTTGAAGGTGAAGAAGCCCCTGAACAGAGATTCACGGGTACTGTCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACATCTACTATTTCTCGTCCGGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCACTGAACCCCCTTCCGATGACTAGACCTAAAAGGCATCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACTCGAGAGGGCTCCTCAAGAATGATTATAGACCATTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACTTTGAGAGGGAATTTAATTGATGGAAACGAGTCTGATACTGCTGAAAAATCTGTTATGTGGTCTCCATCACTAGATGATGAGAAGATTGATGTGGTTTCTACGCCCAAGAAACATGGAGCAGATAGTTGGATGCCTGCAGGAAGTGGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAGCTAATATTGATTCATCCTGTGGTGTCCGAGCTACCTTGGGAGATCCAGCAATAGTAACTGCTAATTCAATCAGAAAGCATGCAGTGTATCAAGATGGAAAATTTAACTTCCTTGGTGGTGGTAGCTCATGGTCTGTCTTGCCCTCTGGTCTTTCACTTAACCTGGTCGACTCTAGTCAGAAGGCTCATATTCAGGCTGGTGACTTGCCTTATCAAATGAGAGGAAATGCCACCTTTAATGGCGTTGGTGATCATTCTATGGCTCAATGTTATAGAATTGATCATTCTATGGCCCATTGTTATAGAATTGAACAGCCTAATGGAAACTGGTCGATGCCTCCACCTTCATCTCATTTTGATCATCCAGTTCATTCAACTGAACTGACTTCGAAACCTATGCTATTTCAGAACCAAGATATTTTGAATCTCAAAGATGGAAATTGTAAGCTTTTTGGCATCTCACTCGTAAAAAATCCTGCTATTTCAGACCCTGCAGAATTGAATAGAAATGTGATCAACGAGGCAGATGTTACACATCCTAATAGACATCCGATCCATTTGAATGAGTCTGAACTATCTAGGGGTTCAAATTTGGCTGATAAATCCCTTGCCATCAACGTGGCTGATAAGTTGCAGCAAGCATGCACACCAAACTTGAAGGATTCTCAGAGAAAATCACAGGGTTCTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCTACAATTATGTTGAATTGATTGCTGAATTGGACCAATTGTTTGAATTTGGTGGCGAGCTTCTGCCTCCCAAAAAGAGTTGGCTTGTTGTATATACGGATGATGAAGGCGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAGTTTTGTTGTATGGTTCGGAAGATTTTTATCTACACAAGAGAAGAGGTCCAGAAGATGAATCCAAGATCCTTAACACTGAAAGGTGATGAGAATCCATCTGTTGAAGGGGAAGAAGCAAAAGAGATTAAAAGTCCGGCATGGGCGTGTGTCAGCCGGGGGGATCTGAAAGAAAGCGTCATGTTTCAGAGTAATTGCTGCCTTAAATGCGACGCCAGTGGCAAGACAGCCGAAGAGTACTCGCTCACACCAGCGGAAAATAATGTATAG 2670 45.06 MTSAEASIKPNSASTFKNHADSTKAPSDPPNALSAKDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRIINVCLMAEPDTDEVFAQITLLPEANQDEDSVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENRELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFVVPYDQYMVSIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRHRSNMVPTSPDSSVLTREGSSRMIIDHSPASAFTRVLQGQEFSTLRGNLIDGNESDTAEKSVMWSPSLDDEKIDVVSTPKKHGADSWMPAGSGEPTYADLLSGFGANIDSSCGVRATLGDPAIVTANSIRKHAVYQDGKFNFLGGGSSWSVLPSGLSLNLVDSSQKAHIQAGDLPYQMRGNATFNGVGDHSMAQCYRIDHSMAHCYRIEQPNGNWSMPPPSSHFDHPVHSTELTSKPMLFQNQDILNLKDGNCKLFGISLVKNPAISDPAELNRNVINEADVTHPNRHPIHLNESELSRGSNLADKSLAINVADKLQQACTPNLKDSQRKSQGSSTRSCTKVHKQGIALGRSVDLSKFYNYVELIAELDQLFEFGGELLPPKKSWLVVYTDDEGDMMLVGDDPWQEFCCMVRKIFIYTREEVQKMNPRSLTLKGDENPSVEGEEAKEIKSPAWACVSRGDLKESVMFQSNCCLKCDASGKTAEEYSLTPAENNV 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18556833 18561638 + CmaCh04G027600.1 Cma04g02760 293841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02760 889 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Cma04g02760 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 839 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma04g02760 889 Gene3D - 145 250 IPR015300 -
Cma04g02760 889 SUPERFAMILY CAD & PB1 domains 725 809 - -
Cma04g02760 889 CDD B3_DNA 146 248 IPR003340 GO:0003677
Cma04g02760 889 SUPERFAMILY DNA-binding pseudobarrel domain 145 277 IPR015300 -
Cma04g02760 889 Gene3D - 728 821 - -
Cma04g02760 889 PANTHER AUXIN RESPONSE FACTOR 2 28 839 - -
Cma04g02760 889 SMART B3_2 148 250 IPR003340 GO:0003677
Cma04g02760 889 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma04g02760 889 MobiDBLite consensus disorder prediction 1 32 - -
Cma04g02760 889 MobiDBLite consensus disorder prediction 397 412 - -
Cma04g02760 889 Pfam AUX/IAA family 779 823 IPR033389 -
Cma04g02760 889 ProSiteProfiles PB1 domain profile. 732 816 IPR000270 GO:0005515
Cma04g02760 889 MobiDBLite consensus disorder prediction 382 412 - -
Cma04g02760 889 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Cma04g02760 889 Gene3D - 311 381 - -
Cma04g02760 889 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02760 Cma-Chr4:18556833 Cma10g00017 Cma-Chr10:64046 0 dispersed
Cma04g02760 Cma-Chr4:18556833 Cma16g00533 Cma-Chr16:2722122 4.29E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34985 PF02362 B3 1.90E-20 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02760 - - bhj:120070853 1445.25