Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02760 | ATGACCTCCGCCGAGGCTTCAATCAAGCCCAATTCTGCATCCACTTTCAAGAACCATGCTGATTCTACCAAAGCCCCCTCTGATCCACCCAACGCGCTCTCTGCCAAGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTTGTTTCTGTCCCTCGTGAAAACGAGCGTGTCTTCTACTTCCCTCAGGGCCACATTGAACAGGTGGAAGCATCAACTAATCAAGTGGCGGACCAACAGATGCCTGTTTATGACCTTCCATCCAAAATCCTCTGCCGCATTATTAATGTGTGCTTAATGGCAGAGCCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATTCTGTGGACAAGGAACCACCTCCTCCTCCTCCACGAAGATTTCATGTGCATTCTTTTTGCAAGACTCTGACTGCATCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGGCGCCATGCTGATGAATGTCTTCCTCCACTGGACATGTCACAACAGCCTCCTACTCAGGAGTTAGTTGCAAAGGATTTGCTTGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGAGAGAATAGAGAACTTCGCGTTGGTGTTAGGCGTGCCATGAGACAGCATGGCAATGTCCCCTCATCGGTCATATCTAGCCATAGTATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACAATGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTTGTTGTTCCATATGACCAGTATATGGTGTCTATTAAGAAGAGCTACACCATAGGGACGAGGTTCAAAATGAGGTTTGAAGGTGAAGAAGCCCCTGAACAGAGATTCACGGGTACTGTCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACATCTACTATTTCTCGTCCGGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCACTGAACCCCCTTCCGATGACTAGACCTAAAAGGCATCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACTCGAGAGGGCTCCTCAAGAATGATTATAGACCATTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACTTTGAGAGGGAATTTAATTGATGGAAACGAGTCTGATACTGCTGAAAAATCTGTTATGTGGTCTCCATCACTAGATGATGAGAAGATTGATGTGGTTTCTACGCCCAAGAAACATGGAGCAGATAGTTGGATGCCTGCAGGAAGTGGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAGCTAATATTGATTCATCCTGTGGTGTCCGAGCTACCTTGGGAGATCCAGCAATAGTAACTGCTAATTCAATCAGAAAGCATGCAGTGTATCAAGATGGAAAATTTAACTTCCTTGGTGGTGGTAGCTCATGGTCTGTCTTGCCCTCTGGTCTTTCACTTAACCTGGTCGACTCTAGTCAGAAGGCTCATATTCAGGCTGGTGACTTGCCTTATCAAATGAGAGGAAATGCCACCTTTAATGGCGTTGGTGATCATTCTATGGCTCAATGTTATAGAATTGATCATTCTATGGCCCATTGTTATAGAATTGAACAGCCTAATGGAAACTGGTCGATGCCTCCACCTTCATCTCATTTTGATCATCCAGTTCATTCAACTGAACTGACTTCGAAACCTATGCTATTTCAGAACCAAGATATTTTGAATCTCAAAGATGGAAATTGTAAGCTTTTTGGCATCTCACTCGTAAAAAATCCTGCTATTTCAGACCCTGCAGAATTGAATAGAAATGTGATCAACGAGGCAGATGTTACACATCCTAATAGACATCCGATCCATTTGAATGAGTCTGAACTATCTAGGGGTTCAAATTTGGCTGATAAATCCCTTGCCATCAACGTGGCTGATAAGTTGCAGCAAGCATGCACACCAAACTTGAAGGATTCTCAGAGAAAATCACAGGGTTCTTCAACAAGGAGCTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCTACAATTATGTTGAATTGATTGCTGAATTGGACCAATTGTTTGAATTTGGTGGCGAGCTTCTGCCTCCCAAAAAGAGTTGGCTTGTTGTATATACGGATGATGAAGGCGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAGTTTTGTTGTATGGTTCGGAAGATTTTTATCTACACAAGAGAAGAGGTCCAGAAGATGAATCCAAGATCCTTAACACTGAAAGGTGATGAGAATCCATCTGTTGAAGGGGAAGAAGCAAAAGAGATTAAAAGTCCGGCATGGGCGTGTGTCAGCCGGGGGGATCTGAAAGAAAGCGTCATGTTTCAGAGTAATTGCTGCCTTAAATGCGACGCCAGTGGCAAGACAGCCGAAGAGTACTCGCTCACACCAGCGGAAAATAATGTATAG | 2670 | 45.06 | MTSAEASIKPNSASTFKNHADSTKAPSDPPNALSAKDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRIINVCLMAEPDTDEVFAQITLLPEANQDEDSVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENRELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFVVPYDQYMVSIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRHRSNMVPTSPDSSVLTREGSSRMIIDHSPASAFTRVLQGQEFSTLRGNLIDGNESDTAEKSVMWSPSLDDEKIDVVSTPKKHGADSWMPAGSGEPTYADLLSGFGANIDSSCGVRATLGDPAIVTANSIRKHAVYQDGKFNFLGGGSSWSVLPSGLSLNLVDSSQKAHIQAGDLPYQMRGNATFNGVGDHSMAQCYRIDHSMAHCYRIEQPNGNWSMPPPSSHFDHPVHSTELTSKPMLFQNQDILNLKDGNCKLFGISLVKNPAISDPAELNRNVINEADVTHPNRHPIHLNESELSRGSNLADKSLAINVADKLQQACTPNLKDSQRKSQGSSTRSCTKVHKQGIALGRSVDLSKFYNYVELIAELDQLFEFGGELLPPKKSWLVVYTDDEGDMMLVGDDPWQEFCCMVRKIFIYTREEVQKMNPRSLTLKGDENPSVEGEEAKEIKSPAWACVSRGDLKESVMFQSNCCLKCDASGKTAEEYSLTPAENNV | 889 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18556833 | 18561638 | + | CmaCh04G027600.1 | Cma04g02760 | 293841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02760 | 889 | ProSiteProfiles | B3 DNA-binding domain profile. | 148 | 250 | IPR003340 | GO:0003677 | |
Cma04g02760 | 889 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 28 | 839 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cma04g02760 | 889 | Gene3D | - | 145 | 250 | IPR015300 | - | |
Cma04g02760 | 889 | SUPERFAMILY | CAD & PB1 domains | 725 | 809 | - | - | |
Cma04g02760 | 889 | CDD | B3_DNA | 146 | 248 | IPR003340 | GO:0003677 | |
Cma04g02760 | 889 | SUPERFAMILY | DNA-binding pseudobarrel domain | 145 | 277 | IPR015300 | - | |
Cma04g02760 | 889 | Gene3D | - | 728 | 821 | - | - | |
Cma04g02760 | 889 | PANTHER | AUXIN RESPONSE FACTOR 2 | 28 | 839 | - | - | |
Cma04g02760 | 889 | SMART | B3_2 | 148 | 250 | IPR003340 | GO:0003677 | |
Cma04g02760 | 889 | Pfam | Auxin response factor | 274 | 356 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cma04g02760 | 889 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma04g02760 | 889 | MobiDBLite | consensus disorder prediction | 397 | 412 | - | - | |
Cma04g02760 | 889 | Pfam | AUX/IAA family | 779 | 823 | IPR033389 | - | |
Cma04g02760 | 889 | ProSiteProfiles | PB1 domain profile. | 732 | 816 | IPR000270 | GO:0005515 | |
Cma04g02760 | 889 | MobiDBLite | consensus disorder prediction | 382 | 412 | - | - | |
Cma04g02760 | 889 | Pfam | B3 DNA binding domain | 148 | 249 | IPR003340 | GO:0003677 | |
Cma04g02760 | 889 | Gene3D | - | 311 | 381 | - | - | |
Cma04g02760 | 889 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02760 | Cma-Chr4:18556833 | Cma10g00017 | Cma-Chr10:64046 | 0 | dispersed | |
Cma04g02760 | Cma-Chr4:18556833 | Cma16g00533 | Cma-Chr16:2722122 | 4.29E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34985 | PF02362 | B3 | 1.90E-20 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02760 | - | - | bhj:120070853 | 1445.25 |