Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02761 ATGGCGGAGCCAGTAGCAGAGCCCAAGGCGTTGCCCGAGCCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTCTCCAACTCTTCGCTTTTGCAGACAAATACGACTGGTTTCTCATGACCCTTGGCAGTTTAGGCGCCGTTGTCCACGGCTCTTCCATGCCCGTTTTCTTTCTCCTTTTCGGCGAAATGGTCAATGGCTTCGGCAAGAACCAGTTCAATTTTCACAAAATGACATCGGAAGTCACTAAGTATGCTCTGTATTTTGTGTACTTGGGTCTCATAGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGACAAGTGAGCACATTGCGAAAGAAGTATTTAGAGGATGTTCTGAAACAAGACGTTGGATTCTTCGACACTGATGCAAGAACAGGGGATGTTGTTTTCAGCATCTCAACAGACACCCTTCTTGTTCAGGATGCAATCAGTGAAAAGGTGGGGAACTTCATTCACTACCTCTCGACGTTCTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCATGGAGGCTAGCACTGTTGAGTATAGCAGTAATTCCAGGCATAGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGACTCACTTCAAAGAGTCGAGAATCATATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCATATGTTGGGGAAAGCAAAGCCCTGAATTCGTATTCAGATTTGATTCAGAATACGCTGAAAATCGGATACAAGGCAGGAATGGCCAAGGGGTTAGGCCTTGGGTGTACCTATGGCATTGCTTGTATGTCTTGGGCTCTTGTCTTCTGGTACGCCGGTGTGTTCATCCGAAACGGCCAGTCCGACGGTGGGAAAGCCTTCACTGCTATATTCTCCGCCATTGTTGGCGGCATGAGTTTGGGGCAGTCGTTTTCAAATTTGGGAGCATTCAGCAAAGGCAAGGTGGCTGGGTACAAATTGATGGAGATAATCAATCAAAGGCCTTCGATCATTCAAGACCCATTAGAGGGAAAGTGCTTGGGTGAAGTTAATGGAAACATTGAGTTTAAAGATGTCTGCTTCAGCTACCCTTCAAGACCGGAAGTGATGATCTTCAGGGATTTCTCTATATTCTTCCCGGCCGGGAAGACGGTGGCTGTCGTCGGCGGTAGCGGTTCCGGTAAAAGCACCATTGTCTCTCTCATTGAAAGATTCTACGATCCCAGTCAAGGGCAAGTTCTTCTGGACAATGTGGATATTAAAACTCTGCAATTGAAATGGCTACGTGATCAGATTGGATTAGTGAACCAAGAGCCGGCTCTGTTTGCAACCACCATATATGAAAACATTCTCTACGGCAAACCGGGCGCAACGACGGCGGAGGTCGAAGCTGCCACGGCTGCAGCCAATGCTCATAGTTTCATCACATTGCTGCCCAATGGCTACAATACCCAGGTTGGGGAAAGAGGATTACAGCTCTCCGGTGGGCAAAAACAGAGGATAGCCATAGCCAGAGCAATGTTGAAGAACCCAAAAATCCTTCTCCTGGATGAAGCCACTAGCGCCCTCGATGCAGGCTCTGAAAGCTTAGTTCAAGAAGCTTTAGACCGATTAATGGTGGGAAGAACAACGGTAGTGGTCGCACATCGATTATCAACCATAAGAAATGTCGATTCAATTGCAGTGTTACAACAGGGGCAAGTCGTCGAAACAGGAACTCACGAAGAACTAATCGCAAAACCCGGAGCTTATTCCTCATTAATTCGCTTCCAAGAAATGGTTCGAAACAGAGAATTCTCCAACCCATCAACCCGTCGATCACGATCTTCACGGCTAAGCCATTCGTTATCGACAAAATCATTAAGCCTCCGCTCCGGCAGCCTTCGAAATTTGAGCTATTCGTACAGCACAGGCGCCGATGGCAGAATCGAAATGGTCTCAAACGCCGAAAGTGACCGGAAAAATCCAGCCCCTGATGGCTATTTCCTTCGTCTTCTTAAACTCAACGGTCCCGAATGGCCGTATTCAATAATGGGCGCTATTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGTAACATGATCGAAGTCTTCTATTACAAAAATCCCTCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATCGGAATCGGAGTTTACGCAGTGGTGGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAAAATCTAACCACCAGAGTCAGAAGAATGATGCTCGCAGCGATCTTGAGGAATGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTGGCGACTGATGCAGCTGATGTGAAATCCGCCATTGCTGAAAGAATATCAGTGATTCTTCAAAACATGACTTCACTCTTCACTTCTTTCATTGTTGCGTTCATTATCGAATGGAGGGTTTCTCTTCTCATCCTTGCAGCTTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGGTTTGCTGGGGATACTGCAAAGGCCCACGCAAAGACGAGTATGATTGCAGGGGAAGGTGTTAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTTCGCCATGAGCTTAATGTTCTTGAGCGGCAGAGCCTTCGTCGGAGCCAAACGGCTGGCGTTCTTTTCGGCATTTCGCAGTTTGCTCTCTATGCATCTGAAGCTCTTGTTCTATGGTACAGTGTTCATTTGGTCAGCAATGGCGGATCGACATTCTCTAAAGTGATTAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCGTTCGGGGTGGTGAATCGATCGGTTCTATTTTCTCCATTCTTGATCGCTCGACGAGAATCGAGCCTGATGATCCTGAGGCAGAACCTGTCGAGAGACTTCGTGGGGAAATCGAACTTCGACATGTTGATTTCGCTTACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATCTTAGGATCAGGGCTGGTCAGAGCCAGGCGTTGGTCGGAGCTAGTGGATCAGGGAAGAGTTCTGTGATTGCCTTGATTGAGAGATTTTACGACCCGATAGCCGGGAAAGTTATGATCGACGGGAAGGACATTCGTCGACTGAATTTACAATCGTTGAGGCTGAAAATTGGGTTGGTACAGCAAGAGCCAGCCCTGTTTGCAGCAAGTATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACAGAAGCTGAAGTAATAGAGGCAGCAAGAGCAGCCAACGTGCATGGCTTTGTGAGTGGACTACCTGATGGCTACAAGACACCAGTTGGGGAAAGGGGCGTTCAGCTTTCTGGTGGTCAAAAACAACGCATTGCTATTGCTAGGGCTGTTCTCAAGGACCCCACAGTCCTCCTCCTCGACGAGGCCACAAGCGCCCTCGACGCCGAGTCAGAGTGCGTGCTACAAGAGGCTTTAGAAAGGCTAATGAGGGGCCGAACCACAGTTGTAGTGGCACATCGCCTATCGACAATCCGGGGTGTCGACAGCATTGGTGTGGTGCAAGATGGGCGCATCGTGGAGCAAGGCAGCCATAACGAGCTGATAAGTCGAGCCGAGGGGGCTTACTCGAGGCTCTTGCAGCTGCAACACCAACACATATGA 3753 47.67 MAEPVAEPKALPEPEKKKEQSLPFLQLFAFADKYDWFLMTLGSLGAVVHGSSMPVFFLLFGEMVNGFGKNQFNFHKMTSEVTKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEDVLKQDVGFFDTDARTGDVVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDLIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKVAGYKLMEIINQRPSIIQDPLEGKCLGEVNGNIEFKDVCFSYPSRPEVMIFRDFSIFFPAGKTVAVVGGSGSGKSTIVSLIERFYDPSQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPGATTAEVEAATAAANAHSFITLLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESLVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVLQQGQVVETGTHEELIAKPGAYSSLIRFQEMVRNREFSNPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAESDRKNPAPDGYFLRLLKLNGPEWPYSIMGAIGSVLSGFISPTFAIVMSNMIEVFYYKNPSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIIEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELNVLERQSLRRSQTAGVLFGISQFALYASEALVLWYSVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSIFSILDRSTRIEPDDPEAEPVERLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDSIGVVQDGRIVEQGSHNELISRAEGAYSRLLQLQHQHI 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18563539 18569742 - CmaCh04G027610.1 Cma04g02761 293842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02761 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Cma04g02761 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Cma04g02761 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Cma04g02761 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Cma04g02761 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Cma04g02761 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g02761 1250 SUPERFAMILY ABC transporter transmembrane region 27 344 IPR036640 GO:0005524|GO:0016021
Cma04g02761 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Cma04g02761 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Cma04g02761 1250 Gene3D ABC transporter type 1, transmembrane domain 26 618 IPR036640 GO:0005524|GO:0016021
Cma04g02761 1250 Gene3D ABC transporter type 1, transmembrane domain 975 1248 IPR036640 GO:0005524|GO:0016021
Cma04g02761 1250 Gene3D ABC transporter type 1, transmembrane domain 665 974 IPR036640 GO:0005524|GO:0016021
Cma04g02761 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Cma04g02761 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g02761 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Cma04g02761 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Cma04g02761 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1248 IPR039421 -
Cma04g02761 1250 SMART AAA_5 1035 1207 IPR003593 -
Cma04g02761 1250 SMART AAA_5 390 582 IPR003593 -
Cma04g02761 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 16 1248 - -
Cma04g02761 1250 SUPERFAMILY ABC transporter transmembrane region 673 987 IPR036640 GO:0005524|GO:0016021
Cma04g02761 1250 Pfam ABC transporter transmembrane region 41 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g02761 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g02761 1250 Gene3D - 353 601 IPR027417 -
Cma04g02761 1250 Gene3D - 998 1247 IPR027417 -
Cma04g02761 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Cma04g02761 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01626 Cma-Chr2:9212193 Cma04g02761 Cma-Chr4:18563539 1.90E-08 dispersed
Cma04g02761 Cma-Chr4:18563539 Cma14g00224 Cma-Chr14:971717 0 dispersed
Cma15g00277 Cma-Chr15:1315054 Cma04g02761 Cma-Chr4:18563539 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02761 K05658 - csv:101212585 2230.68