Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02764 ATGGATTTAGCCCCAGCAGCTCCCATCACTACTACTAATAACACTAAATCCCCCGACCCCGACACTGATAATACTCCCACAACCATTCCGCCGCCTTCCGCTAAATCGCCGCCCTTCACCAACGGCCTTCTCAAGCGCCACCATGCTCAACACCCTCCGCTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCACTTTAGGAGCTCATGCCTTAGACGGATGTGGGGAATTTATGCCCTCTCCTTCTGCCACTCCTACCGATCCCACTTCGCTTAAGTGCGCTGCGTGTGGCTGTCACCGGAATTTCCACCGTCGGGACCCTGAGGAACCAATCTCGACTTTGGCGATTAATTCCGCGCCGACTCATGTGATTGAGTATCAGCCGCACCATCGCCACCACCCGCCTCCTCCACCCTTGGCTGGCAATTGGAGTCCGAATTCTGCGTCGCCGCCGCCGATCTCGTCGTCCTATTACCCATCCGCGCCACATATGTTATTGGCGCTTTCAGCTGGGCTGTCCGGTCCTCCGCCGGAAAACGCACAGCGGAGCCCAAATGGACGGAAACGATTCAGAACAAAATTCAGCAACGAACAGAAGGAGAAAATGTTGGATTTAGCGGAACGAGTTGGATGGAAAATGCAGAAGAGAGACGAAGATTTGGTTCGAGATTTCTGCAATGAAATTGGAATTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACTACCACCACCCCCACCGCCACCGCCGCCGCCGCCGTCAACAACAACGAAGACAGAGCAGATGCGGTAATTAAGAATAAAACTGCATCATCCTCATCATTAGCTGATATAGAAATCCAAGCTAGTTTACACAAAAATATTCCTCTCCCATTACCAAAAATGAGGAAGCGTCAAGTTGTAGTTAGAAGGGAAGAAAGCTCAAGAGACATCGTGGCTTCATCTTTGACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGCGTCGGAGGGTATGCTGTCGACGGGTGTCGGGAATTCATGGCGAGCGGCGACGAAGGGACGACCGCTGCACTCAATTGTGCTGCCTGTGGTTGTCACCGGAACTTCCATAGAAGACAAGTAGGAACTGAGGTTGTGTGTGATTGTTCTTCATCTCCCTCAAATGGAGCTTGA 1218 51.15 MDLAPAAPITTTNNTKSPDPDTDNTPTTIPPPSAKSPPFTNGLLKRHHAQHPPLVTYKECLKNHAATLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEEPISTLAINSAPTHVIEYQPHHRHHPPPPPLAGNWSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQRSPNGRKRFRTKFSNEQKEKMLDLAERVGWKMQKRDEDLVRDFCNEIGIERGVLKVWMHNNKNTMGKKTDTNGATTTTPTATAAAAVNNNEDRADAVIKNKTASSSSLADIEIQASLHKNIPLPLPKMRKRQVVVRREESSRDIVASSLTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALNCAACGCHRNFHRRQVGTEVVCDCSSSPSNGA 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18595504 18599773 - CmaCh04G027640.1 Cma04g02764 293845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02764 405 Pfam ZF-HD protein dimerisation region 337 388 IPR006456 -
Cma04g02764 405 Pfam ZF-HD protein dimerisation region 55 109 IPR006456 -
Cma04g02764 405 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 336 388 - -
Cma04g02764 405 Gene3D - 177 250 - -
Cma04g02764 405 MobiDBLite consensus disorder prediction 170 192 - -
Cma04g02764 405 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 189 246 IPR006455 -
Cma04g02764 405 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 108 IPR006456 -
Cma04g02764 405 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 272 - -
Cma04g02764 405 MobiDBLite consensus disorder prediction 7 23 - -
Cma04g02764 405 MobiDBLite consensus disorder prediction 1 45 - -
Cma04g02764 405 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 336 388 - -
Cma04g02764 405 MobiDBLite consensus disorder prediction 129 149 - -
Cma04g02764 405 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 339 388 IPR006456 -
Cma04g02764 405 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 9 272 - -
Cma04g02764 405 SUPERFAMILY Homeodomain-like 175 250 IPR009057 -
Cma04g02764 405 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 108 IPR006456 -
Cma04g02764 405 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 338 388 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02764 - - - csv:101213548 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02764 Cma-Chr4:18595504 Cma15g00273 Cma-Chr15:1296186 7.56E-16 dispersed
Cma10g00188 Cma-Chr10:862641 Cma04g02764 Cma-Chr4:18595504 1.32E-16 dispersed
Cma01g00785 Cma-Chr1:4243446 Cma04g02764 Cma-Chr4:18595504 9.99E-17 wgd
Cma11g01027 Cma-Chr11:5597756 Cma04g02764 Cma-Chr4:18595504 1.30E-14 wgd
Cma14g00594 Cma-Chr14:2947003 Cma04g02764 Cma-Chr4:18595504 4.94E-14 wgd
Cma15g00271 Cma-Chr15:1286159 Cma04g02764 Cma-Chr4:18595504 6.53E-14 wgd
Cma18g01152 Cma-Chr18:9258379 Cma04g02764 Cma-Chr4:18595504 3.10E-15 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34987 PF04770 ZF-HD_dimer 3.20E-28 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g02764 Cma_Chr04 FPKM 0.463875 1.355326 2.389693 2.345329 28.293858 23.498434 22.561678 1.087335 1.398116 1.563722