Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g02764 | ATGGATTTAGCCCCAGCAGCTCCCATCACTACTACTAATAACACTAAATCCCCCGACCCCGACACTGATAATACTCCCACAACCATTCCGCCGCCTTCCGCTAAATCGCCGCCCTTCACCAACGGCCTTCTCAAGCGCCACCATGCTCAACACCCTCCGCTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCACTTTAGGAGCTCATGCCTTAGACGGATGTGGGGAATTTATGCCCTCTCCTTCTGCCACTCCTACCGATCCCACTTCGCTTAAGTGCGCTGCGTGTGGCTGTCACCGGAATTTCCACCGTCGGGACCCTGAGGAACCAATCTCGACTTTGGCGATTAATTCCGCGCCGACTCATGTGATTGAGTATCAGCCGCACCATCGCCACCACCCGCCTCCTCCACCCTTGGCTGGCAATTGGAGTCCGAATTCTGCGTCGCCGCCGCCGATCTCGTCGTCCTATTACCCATCCGCGCCACATATGTTATTGGCGCTTTCAGCTGGGCTGTCCGGTCCTCCGCCGGAAAACGCACAGCGGAGCCCAAATGGACGGAAACGATTCAGAACAAAATTCAGCAACGAACAGAAGGAGAAAATGTTGGATTTAGCGGAACGAGTTGGATGGAAAATGCAGAAGAGAGACGAAGATTTGGTTCGAGATTTCTGCAATGAAATTGGAATTGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACTACCACCACCCCCACCGCCACCGCCGCCGCCGCCGTCAACAACAACGAAGACAGAGCAGATGCGGTAATTAAGAATAAAACTGCATCATCCTCATCATTAGCTGATATAGAAATCCAAGCTAGTTTACACAAAAATATTCCTCTCCCATTACCAAAAATGAGGAAGCGTCAAGTTGTAGTTAGAAGGGAAGAAAGCTCAAGAGACATCGTGGCTTCATCTTTGACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGCGTCGGAGGGTATGCTGTCGACGGGTGTCGGGAATTCATGGCGAGCGGCGACGAAGGGACGACCGCTGCACTCAATTGTGCTGCCTGTGGTTGTCACCGGAACTTCCATAGAAGACAAGTAGGAACTGAGGTTGTGTGTGATTGTTCTTCATCTCCCTCAAATGGAGCTTGA | 1218 | 51.15 | MDLAPAAPITTTNNTKSPDPDTDNTPTTIPPPSAKSPPFTNGLLKRHHAQHPPLVTYKECLKNHAATLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEEPISTLAINSAPTHVIEYQPHHRHHPPPPPLAGNWSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQRSPNGRKRFRTKFSNEQKEKMLDLAERVGWKMQKRDEDLVRDFCNEIGIERGVLKVWMHNNKNTMGKKTDTNGATTTTPTATAAAAVNNNEDRADAVIKNKTASSSSLADIEIQASLHKNIPLPLPKMRKRQVVVRREESSRDIVASSLTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALNCAACGCHRNFHRRQVGTEVVCDCSSSPSNGA | 405 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 18595504 | 18599773 | - | CmaCh04G027640.1 | Cma04g02764 | 293845 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g02764 | 405 | Pfam | ZF-HD protein dimerisation region | 337 | 388 | IPR006456 | - | |
| Cma04g02764 | 405 | Pfam | ZF-HD protein dimerisation region | 55 | 109 | IPR006456 | - | |
| Cma04g02764 | 405 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 336 | 388 | - | - | |
| Cma04g02764 | 405 | Gene3D | - | 177 | 250 | - | - | |
| Cma04g02764 | 405 | MobiDBLite | consensus disorder prediction | 170 | 192 | - | - | |
| Cma04g02764 | 405 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 189 | 246 | IPR006455 | - | |
| Cma04g02764 | 405 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 57 | 108 | IPR006456 | - | |
| Cma04g02764 | 405 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 9 | 272 | - | - | |
| Cma04g02764 | 405 | MobiDBLite | consensus disorder prediction | 7 | 23 | - | - | |
| Cma04g02764 | 405 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Cma04g02764 | 405 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 336 | 388 | - | - | |
| Cma04g02764 | 405 | MobiDBLite | consensus disorder prediction | 129 | 149 | - | - | |
| Cma04g02764 | 405 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 339 | 388 | IPR006456 | - | |
| Cma04g02764 | 405 | PANTHER | HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN | 9 | 272 | - | - | |
| Cma04g02764 | 405 | SUPERFAMILY | Homeodomain-like | 175 | 250 | IPR009057 | - | |
| Cma04g02764 | 405 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 56 | 108 | IPR006456 | - | |
| Cma04g02764 | 405 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 338 | 388 | IPR006456 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02764 | Cma-Chr4:18595504 | Cma15g00273 | Cma-Chr15:1296186 | 7.56E-16 | dispersed | |
| Cma10g00188 | Cma-Chr10:862641 | Cma04g02764 | Cma-Chr4:18595504 | 1.32E-16 | dispersed | |
| Cma01g00785 | Cma-Chr1:4243446 | Cma04g02764 | Cma-Chr4:18595504 | 9.99E-17 | wgd | |
| Cma11g01027 | Cma-Chr11:5597756 | Cma04g02764 | Cma-Chr4:18595504 | 1.30E-14 | wgd | |
| Cma14g00594 | Cma-Chr14:2947003 | Cma04g02764 | Cma-Chr4:18595504 | 4.94E-14 | wgd | |
| Cma15g00271 | Cma-Chr15:1286159 | Cma04g02764 | Cma-Chr4:18595504 | 6.53E-14 | wgd | |
| Cma18g01152 | Cma-Chr18:9258379 | Cma04g02764 | Cma-Chr4:18595504 | 3.10E-15 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34987 | PF04770 | ZF-HD_dimer | 3.20E-28 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g02764 | - | - | csv:101213548 | 386.726 |