Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02787 ATGGCTAAGAACGATGACTCTTCAAGACCTCCACTCCACCGCCCCACCATTACTCTGCCTCCGCGCCCTTCTATGGACGCCTTCTTCGCCGCCGGACCCACTGGACTTAGCCCTGGCCCTATGACCCTTGTCTCCAGTTTCTTCGCCGACGGTGCAGCTGACTCGCCTTCCTTCTCCCAGCTTCTCGCCGGAGCCATGGGTTCTCCGATGGCTATGGGGTTTCTGGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAGGCAGCTCGGAATTGGAATTTGGGTTGAAGCAATCGAAGCCACTCAATTTGATGGTGGCTCGGTCTCCTTTGTTCTCGGTCCCGCCAGGGCTCAGCCCCTCTGGGTTGCTTAATTCGCCTGGCTTTTATGGTCCTCAGAGTCCATTTGGAATGTCACACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCACTGGCACATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTTAGTACCAGCTCCTATGGAACTGTTGACACGTGATCCATCGTTTACTCTTGATGAAGCTTCTCAACTGTCAGTATTACCCTCCACATCAGACACAAAAAGTATCATTGCAGAATCAACAGAAGTATCTCATTCTGATAGAAAATACCAACCTCCTCCTTCAAATGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATACGGACAGAAGCTGGTTAAGGGCAGTGAATATCCACGAAGCTACTACAAATGCACACATTTGAATTGCCCTGTCAAGAAGAAGATCGAGCGCTCCCCTGATGGTCAAATTACTGAAATTATTTACAAAGGTCAGCATAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATACTAGTGAACCAACTGGGTGTACAAATTCTTTGACGAAGCCTGAAAGTAGATCCCAAACTCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGTTCTAGTGACAGTGAAGAACAAGCTGATACAGAGATAACAGAAAACAGGGATGAAGATGAACCAAATCCAAAGAGGCAGTACTGGGAAAAAACTAAAATATTTGTGGCTTTGCCACATGAGTGCAGGAACATTGATGTAGGGACATCTGGTGTAGCTTTGTCTCATAAAACACTCACAGAACCAAAAATCATTGTTCAAACTAGAAGCGAGGTCGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCCAGGAGCTACTACAAATGTACTAGTGCTGGGTGCAACGTACGCAAGCATGTTGAGAGGTCTTCTACAGACTCGAAAGCTGTCGTAACCACATACGAAGGGAAACATAACCATGATGTCCCTGCAGCTAGAAACAGCAGCCACAACACCGTGTCCCAGATCAAACCGCTTAAGGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAAGGGGGAAGGGAAAAGGGAGAGATAATAGGAAGGAAAAGTCTCAAACGGTTAGATTTCAGGTTTTGCAATTCCAAGAAAACAAAAGGGCAGAGGAAAGGGAAGAAGCAGAGGAGGCAGTTAGGACCCACGAATGTATCTCTTTCTCGCATCCTCTGCTTTCGGACCGTTTCTCAGAGAAACAAAAACAACACGAACTCTTTGGCCAAGTCGTCCTCCGCAGATCTCGCAATCCCAGAGGAGTAGGGATAGGGCCATTGGGGTTCCATTTTCCCCTTGCTGAGCCCATTTCCCGATCGGGGTCGATCTCTGTTGCTTTTGCTTCTCTGATCGATGCTGTCGGGATTTGGTGGTTCATGGGTTGCATTAGTTCCAAGCAGGTTACAAAGGCGACAAAATCTCCCGTCCGCAAACGCCGTGCCACCACCACCGCCACTGCCACCGTCGCCGCAAATGGCGCTGCTGTGACCCTGGATCCTTTGTCCAGAACGCACTCTGTGACGACGCTCGATCATGACAATAAAGGGGATAACAAATCGGATGATCGGAATCGAGAACTCAGAAAATCCAAGAAAGAGAGCTCCCAAGGGGTGAAGGCTTCTCATAGCCTCAAATTAGGGGCTTCTCAGCGCAATGTTGAAGCCGAGCAGGTTGCCGCAGGCTGGCCTTCTTGGCTCAGTAGTGCCGCCGGCGAGGCCGTTCACGGATGGGTTCCTCTCCGAGCTGATTCCTTCGAGAAGTTGGAGAAGATTGGACAAGGTACATACAGCAGCGTGTTCCGTGCTCGACAAGTTGATACAGGGAGGATGGTTGCCTTGAAGAAGGTTCGTTTCGACAATTTCCAACCAGAGAGCATTAGGTTTATGGCACGAGAAATCATGATTTTGCGCAGGCTCGATCACCCAAACATCATGCACTTAGAAGGCATAATTACTTCCAAAATGTCTAGCAGCATTTACCTTGTATTTGAATACATGGAACATGATCTTGCAGGCCTTGTGTCTTGTCCTGATATCGAATTCAGTGAGGCACAGGTCAAGTGTTATATGAGACAGCTTCTATCTGCAATTGAGCATTGCCACCTTCGGGGTATAATGCATAGGGACATTAAAGCATCCAATATTTTGGTAAACAATGAAGGCATTCTCAAGTTGGCAGATTTTGGATTAGCAAATGTCATAAACACAAGAAACAAGCAACTGCTAACAAGTCGAGTGGTAACCTTATGGTATCGCCCTCCTGAGCTTCTGATGGGCTCGACTGATTATGGATTAACCATCGACCTTTGGAGCATAGGATGTGTATTTGCAGAACTGCACCTGGGAAAACCCCTTCTTAAAGGAAGAACCGAGGTTGAACAATTGCACAAAATATTCAAACTTTGCGGCTCCCCACTTGAAGAGTTCTGGAAGAAAACAAAGCTTCCTCATGCAGCTATGTTCAGACCCCAACATGCATACGAAAGTTCCCTGAACGAAAAGTGTAAAGACTTTACACCATCTGCATTGAGCCTTTTGGAAACTTTTCTTGCCATAGAACCTTACAAGCGCGGGACCGCCTCATCTGCTCTCATGTCTGAGTATTTCAAAACCAAGCCATATGCCTGCGATCCATCTACCTTGCCCAAGTATCCACCGAACAAAGAAATGGATGCCAAAAACCGTGAAGATGCACGAAGGAAGAAGGCAAATGCAAGGACAAAAGAACCTGTACCAACACAAAGGGCTAGAAGAGTTAGAAGAAATTTGCCAGAACTCAACGGCCAAAAAGTGCAAGCAAAAGAGGATGGAGAAGAAAACATTCAACCTTCTAGGCGGAACAATGGCGGCAATCATTCCAATGAACAAGGTGACGTTTTCCAGAGAGAGTCGCAGAAGCCACTATATGATACAACATCGGAAGCTGCCGCTGCAACTGCACCAAATCAGATAGGAGACAGCGCATTCACAGCCCCAATTCCACTCTCAGCGTCTAGCGGCTTTGCTTGGGTAAAGAAGAGGAAAGAGGAAGCTACATCTACAATATCAGATGGTCTTAAAAGCCAAATAAGTGCTCTGGATCCATCTTTTGCAAATTACACCCTTGAATTCACAAGAAAATACAATGAACATACGAACATTCCAGCCAATTCAGTCACGCAGGACTATGAAATGCGAAAGCAGCAAAGGAGAGTACATGATTTCCCCGAGTCTTTTGATGCATCCGAAGAATCATTCTTGGAGATGTCCAATGAACTCTATCCGAAACAACAAACCATTGTCACAGCACATCTGGACAACGATGATACGGAATCACACATTGAATTCTCAGGACCTCTGTTAACACAGCCCCATAGAGTAGATGAACTCCTGCAACGAAATGAAAACCACATCCGACGAGTAGCTCGGAAATCCAGGTTCGAAAGAGGTAAAAACGGGGACTTCTGA 3918 46.58 MAKNDDSSRPPLHRPTITLPPRPSMDAFFAAGPTGLSPGPMTLVSSFFADGAADSPSFSQLLAGAMGSPMAMGFLGTGSTPNYYAKDGGSSELEFGLKQSKPLNLMVARSPLFSVPPGLSPSGLLNSPGFYGPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSLVPAPMELLTRDPSFTLDEASQLSVLPSTSDTKSIIAESTEVSHSDRKYQPPPSNASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDTSEPTGCTNSLTKPESRSQTQAGILNKSSENVQLGSSDSEEQADTEITENRDEDEPNPKRQYWEKTKIFVALPHECRNIDVGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHNTVSQIKPLKVVAQKHPLLKEMEFGRGKGKGRDNRKEKSQTVRFQVLQFQENKRAEEREEAEEAVRTHECISFSHPLLSDRFSEKQKQHELFGQVVLRRSRNPRGVGIGPLGFHFPLAEPISRSGSISVAFASLIDAVGIWWFMGCISSKQVTKATKSPVRKRRATTTATATVAANGAAVTLDPLSRTHSVTTLDHDNKGDNKSDDRNRELRKSKKESSQGVKASHSLKLGASQRNVEAEQVAAGWPSWLSSAAGEAVHGWVPLRADSFEKLEKIGQGTYSSVFRARQVDTGRMVALKKVRFDNFQPESIRFMAREIMILRRLDHPNIMHLEGIITSKMSSSIYLVFEYMEHDLAGLVSCPDIEFSEAQVKCYMRQLLSAIEHCHLRGIMHRDIKASNILVNNEGILKLADFGLANVINTRNKQLLTSRVVTLWYRPPELLMGSTDYGLTIDLWSIGCVFAELHLGKPLLKGRTEVEQLHKIFKLCGSPLEEFWKKTKLPHAAMFRPQHAYESSLNEKCKDFTPSALSLLETFLAIEPYKRGTASSALMSEYFKTKPYACDPSTLPKYPPNKEMDAKNREDARRKKANARTKEPVPTQRARRVRRNLPELNGQKVQAKEDGEENIQPSRRNNGGNHSNEQGDVFQRESQKPLYDTTSEAAAATAPNQIGDSAFTAPIPLSASSGFAWVKKRKEEATSTISDGLKSQISALDPSFANYTLEFTRKYNEHTNIPANSVTQDYEMRKQQRRVHDFPESFDASEESFLEMSNELYPKQQTIVTAHLDNDDTESHIEFSGPLLTQPHRVDELLQRNENHIRRVARKSRFERGKNGDF 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18688997 18698230 - CmaCh04G027870.1 Cma04g02787 293868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02787 1305 Pfam Protein kinase domain 742 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02787 1305 MobiDBLite consensus disorder prediction 208 235 - -
Cma04g02787 1305 Gene3D Phosphorylase Kinase; domain 1 729 824 - -
Cma04g02787 1305 MobiDBLite consensus disorder prediction 280 358 - -
Cma04g02787 1305 MobiDBLite consensus disorder prediction 663 695 - -
Cma04g02787 1305 Pfam WRKY DNA -binding domain 407 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 MobiDBLite consensus disorder prediction 1045 1081 - -
Cma04g02787 1305 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 685 1229 - -
Cma04g02787 1305 PANTHER CELL DIVISION PROTEIN KINASE 685 1229 - -
Cma04g02787 1305 CDD STKc_CDK9_like 742 1026 - -
Cma04g02787 1305 Gene3D Transferase(Phosphotransferase) domain 1 825 1066 - -
Cma04g02787 1305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672|GO:0006468
Cma04g02787 1305 SMART WRKY_cls 230 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 SMART WRKY_cls 406 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 ProSitePatterns Protein kinases ATP-binding region signature. 748 771 IPR017441 GO:0005524
Cma04g02787 1305 Gene3D WRKY domain 391 467 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 Gene3D WRKY domain 222 290 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 ProSiteProfiles Protein kinase domain profile. 742 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02787 1305 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 SMART serkin_6 742 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02787 1305 SUPERFAMILY WRKY DNA-binding domain 398 466 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 SUPERFAMILY Protein kinase-like (PK-like) 735 1032 IPR011009 -
Cma04g02787 1305 MobiDBLite consensus disorder prediction 659 703 - -
Cma04g02787 1305 MobiDBLite consensus disorder prediction 1 26 - -
Cma04g02787 1305 MobiDBLite consensus disorder prediction 298 338 - -
Cma04g02787 1305 SUPERFAMILY WRKY DNA-binding domain 228 289 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 MobiDBLite consensus disorder prediction 1100 1114 - -
Cma04g02787 1305 Coils Coil 520 540 - -
Cma04g02787 1305 MobiDBLite consensus disorder prediction 1033 1114 - -
Cma04g02787 1305 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g02787 1305 Coils Coil 1073 1093 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02787 Cma15g00248 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01684 Cma-Chr4:8477538 Cma04g02787 Cma-Chr4:18688997 2.65E-127 dispersed
Cma04g02787 Cma-Chr4:18688997 Cma13g01092 Cma-Chr13:8224255 0 dispersed
Cma01g00805 Cma-Chr1:4338905 Cma04g02787 Cma-Chr4:18688997 0 wgd
Cma15g00248 Cma-Chr15:1187701 Cma04g02787 Cma-Chr4:18688997 0 wgd
Cma18g01123 Cma-Chr18:9120796 Cma04g02787 Cma-Chr4:18688997 1.56E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34990 PF00069 Pkinase 3.50E-66 CL0016 Cma TF
68556 PF00069 Pkinase 3.50E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02787 - - csv:101209513 1068.91