Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02791 ATGCCTTCTCTCCCTGGCTTCCCATTCTCCTCTCCCATGTGGAGCGAGCTTTGCCTGAGGCGAACCACCCCTTCACTCGATGTCCACGACAACATTAACAATACCACCACCGCCGCCGATGAACACCCGATCTCCAACGCCGTTGAGTGCTACGCCTGCACCCAAGTCGGTGTTCCGGCCTTCCACTCCACTAGCTGTGACTATGCCCACCAGCAGCCCGAATGGGAGGCCTCCGCCGGCTCTTCCCTCGTCCCCATTCAACCCGCAAAGACCTCTCCTCGCCGCGCCGACCCACAACTTCGTTCCGGTCGCTTCGGCAGTGTTCTCGACCCTAGAACCAAGCGGGTCCAACGATGGAACCGGGCTCTGTTATTAGCCCGTGGAATGGCCCTCGCCGTCGATCCTCTCTACTTCTACGCGCTCTCCATCGGACGTGGTGGGTCGCCGTGCCTGTACATGGACGGTGGATTAACCGCCGTTGTTACTGTTCTCCGCACGTTCCTCGATGTCGTGCACCTGTGGCATGTTTGGCTCCAGTTCCGCCTCGCCTATGTGTCCAAGGAGAGCATGGTCATTGGCTGCGGCAAACTCGTCTGGGACGCTCGTGATATCGCCTCCCACTATGTTCGTTCCTTCAAAGGCTTCTGGTTCGATGCCTTCGTGATCCTCCCAGTTCCTCAGATTGTTTATTGGTTGGTCTTGCCAAAACTAATCAGAGAAGAGAGAATCAAGCTTATAATGACTGTAATCTTGTTAATGTTCTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGACAAGAATGCAAAAGGTCACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGACTCAATCTCATTGCCTATTTCATCGCCTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAGCGAGTTGCTTCTTGCATCCAGCAACATTGTGAGAGAAACAAGTGCAACCTATCTCTGTCTTGTTCAGAGGAGGTGTGCTATCAGTTTCTCTCATCTGCTACAACCATAGGAAATTCGTGTGGTCGTAATTCGACTTCTGCATTTAGGAAGCCCATATGCTTGGATGTTAATGGTCCATTCGCCTATGGCATCTACAAGTGGGCTCTTCCAGTCATTTCTAGCAATTCCATTGCTGTCAAAATTCTTTATCCCATCTTTTGGGGCTTAATGACTCTCAGCACATTTGGCAATGATCTCGAGCCCACGAGTAATTGGCTAGAAGTATGTTTTAGTATTTGCACAGTACTCAGTGGATTGCTGCTTTTTACTCTTTTGATTGGTAACATCCAGGTTCTTTTGCATGCTGTCATGGCAAGGAGGCGAAAAATGCAGCTGAGATGTCGAGATTTAGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGTTTGAGACATCGAGTTCGACACTATGAACACCAGAGATGGGCAGCCATGGGTGGAGAAGATGAGATGGAACTGATCAATGATTTGCCTGAAGGTCTTAGAAGAGACATTAAACGCCATCTTTGTGTTGATCTTATCAGAAAGGTGCCGCTGTTCCAAAACCTGGATGAGCTGATTCTCGACAACATCTGCGACCGAGTCAAGCCCCTTGTATTTTCCAAAGATGAAAAGATTATCAGAGAAGGAGATCCTGTTCCAAGAATGCTATTCATAGTGTGTGGACGTGTAAAACGTAACCAAAGCCTGAGCAAGGGCATGACAGCATCAAGTTTGATCGAATCGGGAGGATTTCTCGGCGACGAGCTGCTATCATGGTGTCTCCGGCGCCCATTTCTCGAGAGGCTTCCAGCTTCATCAGCTACATTTGTATGCATTGAACCAACAGAAGTATTTTCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGCTACAAATTTGCCAACGAACGACTGAAGAGAACTGCAAGATATTACTCCTCCAATTGGAGAACATGGGCTGCTGTGAACATACAATTTGCTTGGCGTCGCTACAGAAAGAGGATGAGACGTCCAGTGATAACTGTGGTGGAAAATAGAAGCAATGAACGTAGGCTTCTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2133 48.62 MPSLPGFPFSSPMWSELCLRRTTPSLDVHDNINNTTTAADEHPISNAVECYACTQVGVPAFHSTSCDYAHQQPEWEASAGSSLVPIQPAKTSPRRADPQLRSGRFGSVLDPRTKRVQRWNRALLLARGMALAVDPLYFYALSIGRGGSPCLYMDGGLTAVVTVLRTFLDVVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARDIASHYVRSFKGFWFDAFVILPVPQIVYWLVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMTRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNKCNLSLSCSEEVCYQFLSSATTIGNSCGRNSTSAFRKPICLDVNGPFAYGIYKWALPVISSNSIAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRHRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLDELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRNQSLSKGMTASSLIESGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEVFSLKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVITVVENRSNERRLLQYAAMFMSFRPHDHLE 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18711935 18715782 - CmaCh04G027910.1 Cma04g02791 293872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02791 710 CDD CAP_ED 523 630 IPR000595 -
Cma04g02791 710 Gene3D - 150 447 - -
Cma04g02791 710 Gene3D Helix hairpin bin 449 514 - -
Cma04g02791 710 Gene3D Jelly Rolls 521 639 IPR014710 -
Cma04g02791 710 SUPERFAMILY Voltage-gated potassium channels 111 444 - -
Cma04g02791 710 MobiDBLite consensus disorder prediction 79 100 - -
Cma04g02791 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 49 710 - -
Cma04g02791 710 SUPERFAMILY cAMP-binding domain-like 450 637 IPR018490 -
Cma04g02791 710 Pfam Ion transport protein 127 442 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma04g02791 710 ProSiteProfiles cAMP/cGMP binding motif profile. 523 602 IPR000595 -
Cma04g02791 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 49 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02791 Cma-Chr4:18711935 Cma16g00810 Cma-Chr16:4474722 0 dispersed
Cma04g02791 Cma-Chr4:18711935 Cma05g01038 Cma-Chr5:8307756 6.20E-134 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02791 K05391 - csv:101203560 1277.31