Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02808 ATGAATGCGAATAGTTCTCGATTTCAGTCGCTTGGTCAGACCGAGATTAACTGGGACAAGCTTGATAAAGCAAAATTTTATGGCGTAGGAGCTGGTCTCTTTACTGGGATTACAGTTGCACTATACCCTGTTTCTGTTGTAAAAACGAGGATGCAGGTTGCTGTAAAGGATTCTGCCGAGAAAAATGCATTTTCTGTAATTAAAGGCTTACTGAAGAATGATGGGGTTCCTGGTCTTTACAGAGGGTTTGGCACTGTTATCACCGGTGCGATTCCTGCAAGGATTATCTTCCTTACTGCTTTGGAGACTACCAAAGTGGGAACCTTAAAAATGGTTGAGCCATTGAAATTTTCTGAACCCACACAGGCGGCAATAGCAAATGGGTTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTTGTTCCAATTGATGTGATTAGTCAGAAGCTCATGGTTCAAGGATACTCAAGCAATACAAGATATAATGGGGGTTTAGATGTTGCTCGTAAACTGATAAAGTCTGATGGGATCCGGGGATTGTATAAAGGTTTTGGATTATCTGTTATGACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGTATCATCTGGAGGTTCTTAGGCCAAAACTCTGGTGCTGAGAAATTTGCTCCTAGCCATGCCCAACTTATTTCTGTTCAAGCTGCGGGTGGAATAATTGCAGGTGCAACAGCTTCCTGCATTACGACGCCATTGGACACTATTAAGACTCGCTTACAGGTGATGGGTGATAAAGGGCAGACAGCAAGACAAATTGTTGAAAACTTAATCGCCGAGGATGGATGGAAAGGCCTCTATAGGGGGCTGGGTCCTCGGTTTTTCAGCATGTCAGCTTGGGGAACCTCGATGATATTGGCTTACGAGTACCTCAAGCGCCTGTGTGCAAAAGATGAACAGACTTGA 966 44.0 MNANSSRFQSLGQTEINWDKLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNAFSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGTLKMVEPLKFSEPTQAAIANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSSNTRYNGGLDVARKLIKSDGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRIIWRFLGQNSGAEKFAPSHAQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGQTARQIVENLIAEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAKDEQT 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18795033 18803280 - CmaCh04G028080.1 Cma04g02808 293889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02808 321 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085
Cma04g02808 321 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Cma04g02808 321 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Cma04g02808 321 SUPERFAMILY Mitochondrial carrier 19 311 IPR023395 -
Cma04g02808 321 Gene3D Mitochondrial carrier domain 26 321 IPR023395 -
Cma04g02808 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 314 IPR018108 -
Cma04g02808 321 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Cma04g02808 321 Pfam Mitochondrial carrier protein 28 106 IPR018108 -
Cma04g02808 321 Pfam Mitochondrial carrier protein 236 318 IPR018108 -
Cma04g02808 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 319 - -
Cma04g02808 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
Cma04g02808 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
Cma04g02808 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 319 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02808 Cma15g00225 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02808 Cma-Chr4:18795033 Cma15g00239 Cma-Chr15:1166966 2.59E-07 dispersed
Cma14g01569 Cma-Chr14:11759598 Cma04g02808 Cma-Chr4:18795033 9.77E-110 transposed
Cma15g00225 Cma-Chr15:1120065 Cma04g02808 Cma-Chr4:18795033 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02808 K15121 - csv:101206140 593.964