Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02813 ATGATTTGCCTTCTCATTTTAATCGCTCTCAATTTCAGCTTCCTCGACCTCTCACAGGCCAGGCACCATAACAACCTCCCTTCCGCCGCTGCTGCCGTCGTCGGTACCGTCTTCTGCGACACGTGTTTTCAAGACACTTTTTCTAAGACAAGTCACTTCATTTCAGGCGCGACGGTGGCTGTCGAATGTGGCAACGAGGGATCGAACCCGAATTTTAGAGAAGAAGTAAAGACAGACAAGACAGGGGAATTCAAGATTCAGCTGCCAGTTTCAGTGAGGAAGGTTGAGGAATGTTATGTGCGGTTAATAAGAAGCAGTGAACCATATTGTGCGGTGGCTGCAAGAGCCAAATCATCATCGCTTAGGCTGAAGTCAAAAAAACAAGGCACGCATGTGTTCTCGGCTGGATTCTTCACTTTCAAGCCTCTTAAACAGCCAAAACTTTGCAGCCATAACTCACATTCTAATGAATTTGATGACACGAAACAAGTCGTCGACTTCCCGGGCTTACCGGCTCCGATCCAGAACCCGACCGTGCCGAATGTTCCTCGGATTTACGATAACCTTCCTCCTCTACCTCTTCTTCCTGGACTTCCTCCATTGCCTCAACTTCCTCCTCTCCCTCCTCTTCCACCTCTCCCTATTTTTCCATTGTTTCCACCAAAAAAGGATGATGAAAATGTACAAACTCCAAAGATAAGTCAAAACCCGGATCTGTTTCATCCACAAACTTTACTTCCAATTCCATCCTTAAAGCCTTTGAGGCCACATTTTGTTATGCCTCCACATAAGCTGCGCCACCATCCTCTCACGCATGGTCCTACACCGCCCACGGCCGCTGCCTTGGCGGCGGCAGCGGGGGGCGAGTTTCTCTGTCCTCCACCCACCCACCCACCGAAGATCGTATTCTCTTTCGGTCTTCTCTTCTCCCTCCACTTTACTGCTCTTTCCAAGATAATCGAGAATTTTAAGAGATTTGTAGGCGTTGGCACAATGGGTGCTGTCTGCTGCTGTTTGAGCATGGACGATTTTGAAGACTATGTCAATCCTAATAGTTCGGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAATTTCTTAAATGCCTACACATTGATTTTTCGAAGAGGAGAAGTGCATCCTGTCTCTTCATCAATTCAAGGGGCAACATCCATGAGTTCTGCATCATCGACAGACAACTCTTTATCTGAAATATACCGCTCACCTCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGATTGATTTCTAGGCGCGAGAAGGGCTCAAGCCATTTACATGAGGAGTCAGAACCTCTAAGAGGTGAAGTAGATACAGATTCAGAATCTTTGGGCTCGGCAGGCAAATGGAATGGATCTGCTTGTCTTGACGAATCTAAAGAAAATCTTGGCAAGTCATCTCTAAAGATCCCATCAACTAAATCTACCACTGGAGCAGGGTATGCTTATACATCTTCGGAAGACGAGGATGTCTGTCCAACATGTCTTGAAGAATACACCTCAGAGAATCCCAAGATATTGACAAAATGCTGTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGCCCAGTTTGTGGCAAGTATGGATTGAGCATAAGGACTATTCCGGATTTGCAGAACCATCGTGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCACCTCGGGCATAATAACCAACAGGAAGATGGGGCAAGAAATGGATATTAACGATGTGTTTGGGATGACCCAGAATAGTAGCCTGCCAAGAAAGAGTGCAATTTATGTTTGGGGTTATAATCAATCGGGCCAGACGGGTCGAAAGGGGAAGGATCATCAATTAAGGGTTCCTAGGCAGCTCCGTCCTGATCTTTTTGGATGCCCAGTGGAAGCTAATTGTCGATGGCTGGATATTGATTGTGGTCGTGAACATACGGCTGCTGTGGCTTCTGATGGGTCACTTTTTACCTGGGGTGCAAATGATTTTGGTCAACTGGGGGATGGAACTGAGGAAAAGAGCAAAGAGCCAAAGAAAGTGAAGCAATTGCAGATGGAGTTTGTGAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTGCAGAACCTCGCGTGAATGATGGCACGATTTCAACTAGTAGACTCTGGATTTGGGGACAAAATCAGGGATCCAATTTGCCACGCTTATTTTGGGGAGCCTTCACACCAAACACGATTATTCGTCAAGTGTCCTGTGGGGCAGTTCATGTAGTGGCATTATCGGATGATGGGCAAATGCAAGCATGGGGCTACAATGAGTATGGTCAGCTAGGCAGGGGTGTTACATCCGAAGGTCTACAAGGAGCTCGCATTATAAGTGCTTATGCAAAGTTCCTTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCGTGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGGCGAGGTCTATACATGGGGACTAGGAAGTATGGGTCAACTTGGTCACTGTTCCCCTCAGTCTGTGGACAAAGAGTTGATACCTCGGAGAGTTGTTGCTCTTGATGGAATATGGATAAAGGATATTGCATGTGGCGGAGTCCACACATGTGCCATTACTCAAAAAGGCTCTTTATATGCATGGGGTGGCGGTCAAGTTGGACAATTAGGTCTCGGGCCTCAGACTGGGTTTTTTTCATGTGTCGTGGGTGACTCAGAGAAGTTTCTTCGAAATCTACCTGTATTAGTTGTCCCAAATGGTGTTCTACATGTTGCTTGTGGACATTCACATACTCTTGTTTCAATGAAGGATGGAAGGATCCATGGGTGGGGTTACAATAGCTATGGCCAGGCAGCTAACGAGAAATCTACATATGCTTGGTATCCATCTCCTATTGATTGGTGTGTGGGAGAAGTGCGAAAACTAGCAGCTGGTGGTGGACATTCAGCTGTCTTAACAGACGCTTGTTCCTTGAAGGAGCTGTGTGAGTTCAGGCTTGCTGATACTGTTAACTTGCAGAATGCTTCCGAAATAGAAGATGTTGCATCCAGAACGGGATCGGATGCTTTAGCACGCCTTTGGAGTTTCTACTCGATGGCCATTGTGAATACGAAGAAGGCGAAACCAGTCATGGAAAGAAATGAAATAGAGGAAACACAGAGGACAGAAGAAGAAGAATTGAATGCAGTCTGCCAATAA 3237 46.62 MICLLILIALNFSFLDLSQARHHNNLPSAAAAVVGTVFCDTCFQDTFSKTSHFISGATVAVECGNEGSNPNFREEVKTDKTGEFKIQLPVSVRKVEECYVRLIRSSEPYCAVAARAKSSSLRLKSKKQGTHVFSAGFFTFKPLKQPKLCSHNSHSNEFDDTKQVVDFPGLPAPIQNPTVPNVPRIYDNLPPLPLLPGLPPLPQLPPLPPLPPLPIFPLFPPKKDDENVQTPKISQNPDLFHPQTLLPIPSLKPLRPHFVMPPHKLRHHPLTHGPTPPTAAALAAAAGGEFLCPPPTHPPKIVFSFGLLFSLHFTALSKIIENFKRFVGVGTMGAVCCCLSMDDFEDYVNPNSSVYRNCTCLSCFIQNFLNAYTLIFRRGEVHPVSSSIQGATSMSSASSTDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRGEVDTDSESLGSAGKWNGSACLDESKENLGKSSLKIPSTKSTTGAGYAYTSSEDEDVCPTCLEEYTSENPKILTKCCHHFHLGCIYEWMERSDNCPVCGKYGLSIRTIPDLQNHRGGGGGGGSSSSTSGIITNRKMGQEMDINDVFGMTQNSSLPRKSAIYVWGYNQSGQTGRKGKDHQLRVPRQLRPDLFGCPVEANCRWLDIDCGREHTAAVASDGSLFTWGANDFGQLGDGTEEKSKEPKKVKQLQMEFVKSVSCGAHCTAAIAEPRVNDGTISTSRLWIWGQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEGLQGARIISAYAKFLDEAPELVKITKVSCGEYHSAAISENGEVYTWGLGSMGQLGHCSPQSVDKELIPRRVVALDGIWIKDIACGGVHTCAITQKGSLYAWGGGQVGQLGLGPQTGFFSCVVGDSEKFLRNLPVLVVPNGVLHVACGHSHTLVSMKDGRIHGWGYNSYGQAANEKSTYAWYPSPIDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLADTVNLQNASEIEDVASRTGSDALARLWSFYSMAIVNTKKAKPVMERNEIEETQRTEEEELNAVCQ 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18830632 18841819 - CmaCh04G028130.1 Cma04g02813 293894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02813 1078 PRINTS Chromosome condensation regulator RCC1 signature 670 686 IPR000408 -
Cma04g02813 1078 PRINTS Chromosome condensation regulator RCC1 signature 759 775 IPR000408 -
Cma04g02813 1078 PRINTS Chromosome condensation regulator RCC1 signature 946 967 IPR000408 -
Cma04g02813 1078 PRINTS Chromosome condensation regulator RCC1 signature 878 896 IPR000408 -
Cma04g02813 1078 PRINTS Chromosome condensation regulator RCC1 signature 775 789 IPR000408 -
Cma04g02813 1078 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 598 1041 - -
Cma04g02813 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 820 830 IPR000408 -
Cma04g02813 1078 SUPERFAMILY RCC1/BLIP-II 728 1001 IPR009091 -
Cma04g02813 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 552 IPR013083 -
Cma04g02813 1078 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 598 1041 - -
Cma04g02813 1078 SUPERFAMILY RCC1/BLIP-II 607 790 IPR009091 -
Cma04g02813 1078 Pfam Pollen protein Ole e 1 like 33 117 - -
Cma04g02813 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 773 833 IPR000408 -
Cma04g02813 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 668 719 IPR000408 -
Cma04g02813 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 608 667 IPR000408 -
Cma04g02813 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 889 950 IPR000408 -
Cma04g02813 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 951 1001 IPR000408 -
Cma04g02813 1078 Gene3D - 805 1008 IPR009091 -
Cma04g02813 1078 Gene3D - 588 804 IPR009091 -
Cma04g02813 1078 ProSiteProfiles Zinc finger RING-type profile. 508 548 IPR001841 -
Cma04g02813 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 888 946 IPR000408 -
Cma04g02813 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 610 664 IPR000408 -
Cma04g02813 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 833 885 IPR000408 -
Cma04g02813 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 667 716 IPR000408 -
Cma04g02813 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 772 830 IPR000408 -
Cma04g02813 1078 SUPERFAMILY RING/U-box 503 552 - -
Cma04g02813 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 834 888 IPR000408 -
Cma04g02813 1078 MobiDBLite consensus disorder prediction 387 407 - -
Cma04g02813 1078 MobiDBLite consensus disorder prediction 434 461 - -
Cma04g02813 1078 SMART ring_2 508 548 IPR001841 -
Cma04g02813 1078 MobiDBLite consensus disorder prediction 434 454 - -
Cma04g02813 1078 Pfam Ring finger domain 507 548 IPR001841 -
Cma04g02813 1078 MobiDBLite consensus disorder prediction 387 420 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02813 Cma15g00221 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00326 Cma-Chr2:1595670 Cma04g02813 Cma-Chr4:18830632 9.61E-07 dispersed
Cma04g02813 Cma-Chr4:18830632 Cma07g01272 Cma-Chr7:7087477 1.09E-22 dispersed
Cma11g01524 Cma-Chr11:9961139 Cma04g02813 Cma-Chr4:18830632 3.36E-11 dispersed
Cma13g00390 Cma-Chr13:4475954 Cma04g02813 Cma-Chr4:18830632 2.07E-07 dispersed
Cma14g00735 Cma-Chr14:3681273 Cma04g02813 Cma-Chr4:18830632 8.06E-14 dispersed
Cma15g01239 Cma-Chr15:7852624 Cma04g02813 Cma-Chr4:18830632 1.22E-24 dispersed
Cma17g01425 Cma-Chr17:9389098 Cma04g02813 Cma-Chr4:18830632 2.90E-10 dispersed
Cma20g00765 Cma-Chr20:3613767 Cma04g02813 Cma-Chr4:18830632 5.16E-07 transposed
Cma01g00426 Cma-Chr1:2147308 Cma04g02813 Cma-Chr4:18830632 8.70E-40 wgd
Cma15g00221 Cma-Chr15:1097974 Cma04g02813 Cma-Chr4:18830632 1.37E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02813 - - csv:101207094 848.195