Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02831 ATGGGTATGAGCAGAGCTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGCTTTGGGCTTCTGCAATAAATGGCTTGCTATCTCCCAAAGGTGTAAACTATGAAGTTCAAGCTCTGATGGGTATAAAAGCTTCCCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGAGACTCTGTTGACCCATGTAGCTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCCTAGGGACCCCAAGCCAGAACCTGTCTGGGACTCTTTCTTCAAGTATTGGGAACTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATTACAGGCCCAATTCCCCCGGAGATTGGGAGGCTCTCAAAGCTTCAAACACTTGATCTATCCAACAATGTCTTCACTGGGGACATTCCTTCTTCTTTAGCCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGCCTTTCTGGGGCAATTCCAATGGCTTTAGCTAACATGACCCACCTTGCATTTCTTGATGTATCATATAATAATATCAGTGGCCCTCTCCCCAGATTTCCCAGCAAAACATTCAACATTGTTGGAAATCCTCTGATCTGTGCGACCGGGACCGAGGCCGGTTGTCACGGGACGACTCTAATGCCCATGTCCATGAATTTGAACTCTACACAAACTGGTTTACCTCCTGTGAGATTGAAGAGTCACAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCTTATGTCTCATTGTTCTTGTATTTGGACTGTTTATATGGTGGAGAAGACGAAACAATCAACCGACGTTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTAAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAACTTCAACAGCAAGAACATACTAGGAAAGGGAGGCTTTGGGAATGTTTACAAAGGAATTCTTTCGGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGTCGAGGTGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTCGCCGTGCACCGTCATCTCCTCAGGCTATACGGCTTCTGCAACACACCTACTGAAAGGCTTCTTGTTTACCCCTATATGTCTAATGGAAGCGTGGCCTCCCGTCTTAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGAATAGCTATAGGAGCTGCAAGGGGATTGCTATACCTTCATGAACAATGTGATCCAAAGATAATACATAGAGACGTTAAGGCTGCAAACATCTTGCTCGACGACTACTGTGAGGCTGTCGTTGGAGATTTCGGGTTGGCAAAGCTTCTCGACCACCAAGATTCACATGTCACAACTGCCGTGAGAGGCACGGTGGGTCATATAGCTCCCGAGTATCTCTCCACCGGGCAGTCATCGGAGAAAACGGATGTTTTCGGATTCGGAATCCTTCTTCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGATTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAGTGCTAGTGGACAAGGATCTGAAAGCAAACTACGACAGAGTTGAGCTAGAAGAGATGGTTCAAGTGGCTCTGTTGTGCACACAATATCTACCAGGACACAGACCAAAGATGTCGGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTCAGATGGGAAGCTTCTCAGAGAGTTGATACCTCAAAGTGCAAACCCCATGACTTCTCTTCATCAGATAGATACTCTGATCTCACAGATGATTCATCGTTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1881 45.67 MGMSRAEATVSCLVASLLLWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPIPPEIGRLSKLQTLDLSNNVFTGDIPSSLAHLRSLQYLRLNNNSLSGAIPMALANMTHLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGTEAGCHGTTLMPMSMNLNSTQTGLPPVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRNNQPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFNSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDTSKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18924345 18928355 - CmaCh04G028310.1 Cma04g02831 293912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02831 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 626 - -
Cma04g02831 626 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Cma04g02831 626 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Cma04g02831 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02831 626 Pfam Protein kinase domain 307 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02831 626 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 9 626 - -
Cma04g02831 626 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Cma04g02831 626 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Cma04g02831 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Cma04g02831 626 SMART serkin_6 306 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02831 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Cma04g02831 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Cma04g02831 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Cma04g02831 626 SUPERFAMILY L domain-like 35 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02831 Cma15g00205 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02193 Cma-Chr4:15292397 Cma04g02831 Cma-Chr4:18924345 0 dispersed
Cma04g02831 Cma-Chr4:18924345 Cma18g01070 Cma-Chr18:8860581 0 dispersed
Cma15g00205 Cma-Chr15:1002463 Cma04g02831 Cma-Chr4:18924345 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68558 PF00069 Pkinase 4.60E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02831 - - csv:101209443 1201.42