Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02839 ATGTTGAAGAAGCTCAGAAGAAATTTCAGAACATTCAAAACCTTAATCAGCAAGACCTTCAACAACTCTCAATCTTCGTCTTCTTCACCATCCAAACCATATAAATTCCCTCCATTGCCGCTTCCTCTGTCACCGTCGGAAATGTCGTCGCCGTCGCAATCATTCCGGCAATCATTACCACCCGCCGTCGCCCCCTTTCCTCAAACCCAATCCACCGTTCTTCCCGATCCTTCAAATTTCTTCGCTCCTCACCTTCTCTCCTCTCCCCTTCCCACAAATTCCTTCTTCCAGAACTTCACCGTCAAAAATGGCGATCAGCCGGAATACATTCATCCCTATCTTATTAAATCCTCCCTCTCCGAAGTTTCAATTTCATACCCATCGATGTTCTCGAACACCGCTTTCGGATATCAGGTTTTCAATGCCGATTGGACCGTCTCTGAAAATCCTGCCTCTGTTTCGCAAAAACCCCATATAATATCATCGTTTAGTGATCTCAGTCTCATTCTTGATACCCCCTCCGGTAATCTCCGATTCTTCCTCGTTCGTGGAAGCCCATTTTTTACTTTCGAGGTTTTCAACAATACCCCAATTTCAATCTCCACCATTCATGCGATTCTCTCGTTTTCATCCAATAGTTCGCTGACGAAATTCACTGTCACTCTCAACAACAACCAGACATGGCTGATTTACTCCTCGTCTCCGATCAATTTGACGCACAGCCTCTCGCAGATTACTTCCGGTGGATTCTCCGGCATCGTTAGAATTGCGGTTTTGCCGAGCCCACATTTAGAATCAATCCTCGATCGGTTCTGTTCTTGTTACCCTGTTTCAGGTGAGGTGAATTTCAGAAACCCTTCTTCTTTGGAGTACAAATGGGAGAAGAATGGTTGGGGAAACTTGTTAATGCTTGCACATCCTCTTCATCTTCGCTTACTCTCTAGCGATGATTCCGCCATTGTTCTTGATGATTTCAAGTACAAGAGTATCGACGGTGATCTAGTCGGCGTCGTTGGTGGCTCGTGGGTTTTGAAACCTGACCCTGTTTCTATAACATGGCATTCAATCAATGGCATTGGAGAGGAATTTCAAAGCGAAATTATCTCTGCGCTTGTGAAAGATGTTGAGGGTTTGAAATCTTCACCCATTACAACAACATCGTCTTATTTCTATGCGAAAGCGATTGCGAGAGCTGCTAGGCTCGCATTGATTGCTGAGGAAGTGAATTTTCTGCAGGTGATTCCTGAAGTGAGGAAGTTTTTGAAGGATGCTATTGAGCCATGGCTGCGTGGTACTTTCAATGGCAATGGATTTCTTTATGATAGTAAATGGGGTGGCCTTGTAACCCAACAAGGGGCTTCTGATTCTGGTGCTGATTTTGGATTTGGTGTCTATAATGATCACCATTATCATATTGGTTACTTTCTTTACGCCATTGCTGTGCTGGTCAAGATTGATCCAGCTTGGGGAAGAAAGTTTAGGCCTCAAGCTTACTCTTTAATGGCGGATTTCATGAACTTGAGTAGGAAATCTAGCTCAAAGTTCCCACGTTTGAGATGTTTTGACTTGTATAAACTGCACTCTTGGGCTTCGGGGTTGACCGAATTCGCCGACGGTCGGAATCAAGAGAGCAGCAGTGAGGCTGTGAATGCTTATTACTCTGCAGCTTTGTTGGGGTTGGCTTATGGAGATACTCATCTTGCTTCCATTGGATCAACACTAACAGCTTTGGAGATCAAGGCAGCTCAAACATGGTGGCAAATCAGGGGAGGGGAGAATCTTTATGAGACTGATTTCGCCAGAGAAAACAAGGTGGTTGGAGTGTTGTGGTCTAACAAAAGGGACAGTGGCTTGTGGTTTGCCCCTCCTGATTGGAGAGAATGTAGGCTTGGGATTCAGCTGCTGCCTTTGTTGCCCATCACTGAGGCTTTGTTCTCTGATGCTGCCTTTGCCAAGGAGCTTGTGGATTGGACATTGCCTTCTTTGAGAAGGGAAGGAGTTGGGGAAGGATGGAAGGGATTTGCTTACGCCTTGCAGGGCATTTACGATAAAGACGGGGCGGTGCAAAATATCCGAAACTTGAAGGGGTTCGACGACGGGAACTCGCTCTCTAATCTGTTGTGGTGGGTTCATAGTCGAGGAGGAGGAGGTGATGAGGGTGAAGGGCTTGGTGGGCAGCCCAAATCTCAGATGGGGAATCTCAAAATTGTAAACTTTACTCGTTCATTTTGGCCTCTCTGCATGTGCGAGCTCAACATCGGCTCCAGCAAGTCGCACCCACGTTTTGTAAAACCGCCCCCCATTATTGTCACCAGAGGATATTTCTGGGGCTACCGAGTGGACTTCAGAGATTCCATTTTCGAGCTTCGGATTCGTTCGCAGAGGGGGATTTCATCGCTTCAGCGAGAGGGCTCTGTGAATTGGATTATGGCTTCTTCGCCTTCTCCGAGTGTTTCTCCTCCTGAGAATCCGTCAGATTCCGCATTTTTTTCACCTCCTTCTCCTTCTCCTCCGGCGGAATCCGCAATATCTCCGACATCTTCTGAGCCTAATCAGACCGGTGAACCTCCTTCTTCACCTTCTACTTCTTCAGCTCCACCTCCTCAATCACCACCAGCTGATGCTCCTCCTCCTTCTCCTCCACTGTCTCCTCCACCATTGACAGCATCACCACCTGTACCACCTGAATCCCCACCTCCTCCACCACCACCTTCGCCTCCTTTATCTTCGCCGTCGCCGCCACCACCTTCAACATCAACCTCTGCACCACCACCTTCAACATCAACCTCTCCTCCACCACCACCAACTTCCTCTGCATCACCACCTCCTCCAGATCAATCCACTGCCTCTCCTCCTCGTGATGCTTCACCTTCGCCTCCTGATTTAACGATGTCGCCGCCTCCACCACCTGCAGATAATTCTCCACCTCCTCAATCTAATCCTAGTCCTCCACCTTCAACTTCCTCTCCTCCTCCCCCTGACATAACTTCAGCTTCTCCACCTCCACCTTCTAAGGCCCCAACACCACCTTCACCGACGGGAGAGTCGCCTAATGTATCTCCCCCAGCCCCCAAGGTTTCTCCTCCTCCTCCTGATTCTCAATCTCCACCATCAGTTGAGGTCCCCCCACCAAGATCCTCAGTTCCATCACCTCCTCCTTCAGTCCCTTCATCATCTACTCCCCCTCCAGTTACTGTTCCTGGTTCTCCATCTAATTCATCCGCTGAAGGCCCCATTAGCCCTCCAACTTCTGGTATACCCGAACGACCGATTCCAACAATGAATGGTACTGACATCACTGTAAAGAAAGGGGGTCTCAACATCGTAACATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGGTATGTGGTTTGTTCTGAAACGGAAGAGAAGAAAGAAGAGTATCCCTTACACCATGCCTTCTCCTTTTTCCTCCCAAAACTCAGATTCAATTTTCTTAAGGCCCCATTCTTCAGCTCCCATGGCAGGCAGTCGTACCGATAGTGAATTCAAGTATTCACCATCTGAAGGAGGTGGAGTAGGTAATTCAAGATCATTTCCTTATGAAGAGCTACACCAGGCAACGAGTGGATTTTCGTCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGCACCCTTGCAGATGGAAGAGAGGTAGCCGTTAAACAACTTAAAGTGGGTGGTGGTCAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTCGGTTACTGTATTTCTGATCATCAAAGATTGCTCGTCTATGATTATGTTCCAAACAATACCCTTCATTACCATCTGCACGATGCGAACAGGCCGGTGTTGGCTTGGGCTACACGTGTTCGAATCGCTGCTGGTGCAGCCCGTGGAATTGCTTACCTACATGAAGATTGCCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTCGATATCAACTTCGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCGCTGGATTCGCATACACATGTAACGACTCGTGTAATGGGAACCTTTGGATACATGGCTCCAGAATACGCAACAAGTGGAAAATTGACAGACAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTACCGGTCGCAAGCCTGTAGATTCTTCTCAGCCTTTAGGGGACGAGAGCTTAGTCGAATGGGCTCGACCGTTGCTAGCACAAGCTATCGAGGACGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGAGAACAGTTACGTTGACAGAGAAATGTTTCGGATGATCGAAGCAGCCGCTGCTTGCGTTCGCCATTCGGGAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCATTGGATGAAATGTCTGATCTCGCAAATGGGGTGAAGCCTGGACAAAGTGGAGTGTTTGATTCAGCTGAACATTCTGCTCAGATCAGAATGTTTCAAAGAATGGCTTTTGGGAGTCAAGATTACAGTTATGGTTACTCGGATCGAGATCGAAGTCGGAGTTACAGTCAAACTCCGAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGCCCCTCGGCACCTATGAATCGATCCCGACAATGGAACATCTGA 4692 47.53 MLKKLRRNFRTFKTLISKTFNNSQSSSSSPSKPYKFPPLPLPLSPSEMSSPSQSFRQSLPPAVAPFPQTQSTVLPDPSNFFAPHLLSSPLPTNSFFQNFTVKNGDQPEYIHPYLIKSSLSEVSISYPSMFSNTAFGYQVFNADWTVSENPASVSQKPHIISSFSDLSLILDTPSGNLRFFLVRGSPFFTFEVFNNTPISISTIHAILSFSSNSSLTKFTVTLNNNQTWLIYSSSPINLTHSLSQITSGGFSGIVRIAVLPSPHLESILDRFCSCYPVSGEVNFRNPSSLEYKWEKNGWGNLLMLAHPLHLRLLSSDDSAIVLDDFKYKSIDGDLVGVVGGSWVLKPDPVSITWHSINGIGEEFQSEIISALVKDVEGLKSSPITTTSSYFYAKAIARAARLALIAEEVNFLQVIPEVRKFLKDAIEPWLRGTFNGNGFLYDSKWGGLVTQQGASDSGADFGFGVYNDHHYHIGYFLYAIAVLVKIDPAWGRKFRPQAYSLMADFMNLSRKSSSKFPRLRCFDLYKLHSWASGLTEFADGRNQESSSEAVNAYYSAALLGLAYGDTHLASIGSTLTALEIKAAQTWWQIRGGENLYETDFARENKVVGVLWSNKRDSGLWFAPPDWRECRLGIQLLPLLPITEALFSDAAFAKELVDWTLPSLRREGVGEGWKGFAYALQGIYDKDGAVQNIRNLKGFDDGNSLSNLLWWVHSRGGGGDEGEGLGGQPKSQMGNLKIVNFTRSFWPLCMCELNIGSSKSHPRFVKPPPIIVTRGYFWGYRVDFRDSIFELRIRSQRGISSLQREGSVNWIMASSPSPSVSPPENPSDSAFFSPPSPSPPAESAISPTSSEPNQTGEPPSSPSTSSAPPPQSPPADAPPPSPPLSPPPLTASPPVPPESPPPPPPPSPPLSSPSPPPPSTSTSAPPPSTSTSPPPPPTSSASPPPPDQSTASPPRDASPSPPDLTMSPPPPPADNSPPPQSNPSPPPSTSSPPPPDITSASPPPPSKAPTPPSPTGESPNVSPPAPKVSPPPPDSQSPPSVEVPPPRSSVPSPPPSVPSSSTPPPVTVPGSPSNSSAEGPISPPTSGIPERPIPTMNGTDITVKKGGLNIVTSVAVGSVVGVLVLSLVIMGMWFVLKRKRRKKSIPYTMPSPFSSQNSDSIFLRPHSSAPMAGSRTDSEFKYSPSEGGGVGNSRSFPYEELHQATSGFSSNNLLGEGGFGCVYKGTLADGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDHQRLLVYDYVPNNTLHYHLHDANRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLENSYVDREMFRMIEAAAACVRHSGVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEHSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQTPSSWSRESRDQSPSAPMNRSRQWNI 1563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18961285 18970092 + CmaCh04G028390.1 Cma04g02839 293920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02839 1563 ProSiteProfiles Protein kinase domain profile. 1206 1467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02839 1563 Pfam Glycosyl hydrolase family 81 N-terminal domain 87 353 IPR040451 -
Cma04g02839 1563 ProSitePatterns Protein kinases ATP-binding region signature. 1212 1234 IPR017441 GO:0005524
Cma04g02839 1563 MobiDBLite consensus disorder prediction 20 61 - -
Cma04g02839 1563 MobiDBLite consensus disorder prediction 841 859 - -
Cma04g02839 1563 Pfam Protein tyrosine and serine/threonine kinase 1209 1479 IPR001245 GO:0004672|GO:0006468
Cma04g02839 1563 MobiDBLite consensus disorder prediction 1529 1563 - -
Cma04g02839 1563 Gene3D - 80 271 - -
Cma04g02839 1563 MobiDBLite consensus disorder prediction 860 1068 - -
Cma04g02839 1563 MobiDBLite consensus disorder prediction 1143 1187 - -
Cma04g02839 1563 MobiDBLite consensus disorder prediction 1146 1162 - -
Cma04g02839 1563 MobiDBLite consensus disorder prediction 812 1097 - -
Cma04g02839 1563 PANTHER ENDO-1,3(4)-BETA-GLUCANASE 1 65 718 IPR005200 GO:0052861
Cma04g02839 1563 MobiDBLite consensus disorder prediction 817 840 - -
Cma04g02839 1563 SMART serkin_6 1206 1447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g02839 1563 MobiDBLite consensus disorder prediction 1525 1563 - -
Cma04g02839 1563 MobiDBLite consensus disorder prediction 46 61 - -
Cma04g02839 1563 PANTHER ENDO-1,3(4)-BETA-GLUCANASE-RELATED 65 718 - -
Cma04g02839 1563 Pfam Glycosyl hydrolase family 81 C-terminal domain 361 709 IPR040720 -
Cma04g02839 1563 Gene3D Phosphorylase Kinase; domain 1 1179 1281 - -
Cma04g02839 1563 SUPERFAMILY Protein kinase-like (PK-like) 1189 1479 IPR011009 -
Cma04g02839 1563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1326 1338 IPR008271 GO:0004672|GO:0006468
Cma04g02839 1563 Gene3D Transferase(Phosphotransferase) domain 1 1282 1494 - -
Cma04g02839 1563 CDD STKc_IRAK 1212 1482 - -
Cma04g02839 1563 PRINTS Proline rich extensin signature 884 900 - -
Cma04g02839 1563 PRINTS Proline rich extensin signature 870 882 - -
Cma04g02839 1563 PRINTS Proline rich extensin signature 904 916 - -
Cma04g02839 1563 PRINTS Proline rich extensin signature 923 944 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02839 Cma15g00198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02839 Cma-Chr4:18961285 Cma15g00199 Cma-Chr15:969569 0 dispersed
Cma09g01289 Cma-Chr9:8888752 Cma04g02839 Cma-Chr4:18961285 0 transposed
Cma15g00198 Cma-Chr15:963133 Cma04g02839 Cma-Chr4:18961285 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68559 PF17652 Glyco_hydro81C 2.20E-103 CL0059 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02839 K01180 - csv:101211418 1228.39