Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g02839 | ATGTTGAAGAAGCTCAGAAGAAATTTCAGAACATTCAAAACCTTAATCAGCAAGACCTTCAACAACTCTCAATCTTCGTCTTCTTCACCATCCAAACCATATAAATTCCCTCCATTGCCGCTTCCTCTGTCACCGTCGGAAATGTCGTCGCCGTCGCAATCATTCCGGCAATCATTACCACCCGCCGTCGCCCCCTTTCCTCAAACCCAATCCACCGTTCTTCCCGATCCTTCAAATTTCTTCGCTCCTCACCTTCTCTCCTCTCCCCTTCCCACAAATTCCTTCTTCCAGAACTTCACCGTCAAAAATGGCGATCAGCCGGAATACATTCATCCCTATCTTATTAAATCCTCCCTCTCCGAAGTTTCAATTTCATACCCATCGATGTTCTCGAACACCGCTTTCGGATATCAGGTTTTCAATGCCGATTGGACCGTCTCTGAAAATCCTGCCTCTGTTTCGCAAAAACCCCATATAATATCATCGTTTAGTGATCTCAGTCTCATTCTTGATACCCCCTCCGGTAATCTCCGATTCTTCCTCGTTCGTGGAAGCCCATTTTTTACTTTCGAGGTTTTCAACAATACCCCAATTTCAATCTCCACCATTCATGCGATTCTCTCGTTTTCATCCAATAGTTCGCTGACGAAATTCACTGTCACTCTCAACAACAACCAGACATGGCTGATTTACTCCTCGTCTCCGATCAATTTGACGCACAGCCTCTCGCAGATTACTTCCGGTGGATTCTCCGGCATCGTTAGAATTGCGGTTTTGCCGAGCCCACATTTAGAATCAATCCTCGATCGGTTCTGTTCTTGTTACCCTGTTTCAGGTGAGGTGAATTTCAGAAACCCTTCTTCTTTGGAGTACAAATGGGAGAAGAATGGTTGGGGAAACTTGTTAATGCTTGCACATCCTCTTCATCTTCGCTTACTCTCTAGCGATGATTCCGCCATTGTTCTTGATGATTTCAAGTACAAGAGTATCGACGGTGATCTAGTCGGCGTCGTTGGTGGCTCGTGGGTTTTGAAACCTGACCCTGTTTCTATAACATGGCATTCAATCAATGGCATTGGAGAGGAATTTCAAAGCGAAATTATCTCTGCGCTTGTGAAAGATGTTGAGGGTTTGAAATCTTCACCCATTACAACAACATCGTCTTATTTCTATGCGAAAGCGATTGCGAGAGCTGCTAGGCTCGCATTGATTGCTGAGGAAGTGAATTTTCTGCAGGTGATTCCTGAAGTGAGGAAGTTTTTGAAGGATGCTATTGAGCCATGGCTGCGTGGTACTTTCAATGGCAATGGATTTCTTTATGATAGTAAATGGGGTGGCCTTGTAACCCAACAAGGGGCTTCTGATTCTGGTGCTGATTTTGGATTTGGTGTCTATAATGATCACCATTATCATATTGGTTACTTTCTTTACGCCATTGCTGTGCTGGTCAAGATTGATCCAGCTTGGGGAAGAAAGTTTAGGCCTCAAGCTTACTCTTTAATGGCGGATTTCATGAACTTGAGTAGGAAATCTAGCTCAAAGTTCCCACGTTTGAGATGTTTTGACTTGTATAAACTGCACTCTTGGGCTTCGGGGTTGACCGAATTCGCCGACGGTCGGAATCAAGAGAGCAGCAGTGAGGCTGTGAATGCTTATTACTCTGCAGCTTTGTTGGGGTTGGCTTATGGAGATACTCATCTTGCTTCCATTGGATCAACACTAACAGCTTTGGAGATCAAGGCAGCTCAAACATGGTGGCAAATCAGGGGAGGGGAGAATCTTTATGAGACTGATTTCGCCAGAGAAAACAAGGTGGTTGGAGTGTTGTGGTCTAACAAAAGGGACAGTGGCTTGTGGTTTGCCCCTCCTGATTGGAGAGAATGTAGGCTTGGGATTCAGCTGCTGCCTTTGTTGCCCATCACTGAGGCTTTGTTCTCTGATGCTGCCTTTGCCAAGGAGCTTGTGGATTGGACATTGCCTTCTTTGAGAAGGGAAGGAGTTGGGGAAGGATGGAAGGGATTTGCTTACGCCTTGCAGGGCATTTACGATAAAGACGGGGCGGTGCAAAATATCCGAAACTTGAAGGGGTTCGACGACGGGAACTCGCTCTCTAATCTGTTGTGGTGGGTTCATAGTCGAGGAGGAGGAGGTGATGAGGGTGAAGGGCTTGGTGGGCAGCCCAAATCTCAGATGGGGAATCTCAAAATTGTAAACTTTACTCGTTCATTTTGGCCTCTCTGCATGTGCGAGCTCAACATCGGCTCCAGCAAGTCGCACCCACGTTTTGTAAAACCGCCCCCCATTATTGTCACCAGAGGATATTTCTGGGGCTACCGAGTGGACTTCAGAGATTCCATTTTCGAGCTTCGGATTCGTTCGCAGAGGGGGATTTCATCGCTTCAGCGAGAGGGCTCTGTGAATTGGATTATGGCTTCTTCGCCTTCTCCGAGTGTTTCTCCTCCTGAGAATCCGTCAGATTCCGCATTTTTTTCACCTCCTTCTCCTTCTCCTCCGGCGGAATCCGCAATATCTCCGACATCTTCTGAGCCTAATCAGACCGGTGAACCTCCTTCTTCACCTTCTACTTCTTCAGCTCCACCTCCTCAATCACCACCAGCTGATGCTCCTCCTCCTTCTCCTCCACTGTCTCCTCCACCATTGACAGCATCACCACCTGTACCACCTGAATCCCCACCTCCTCCACCACCACCTTCGCCTCCTTTATCTTCGCCGTCGCCGCCACCACCTTCAACATCAACCTCTGCACCACCACCTTCAACATCAACCTCTCCTCCACCACCACCAACTTCCTCTGCATCACCACCTCCTCCAGATCAATCCACTGCCTCTCCTCCTCGTGATGCTTCACCTTCGCCTCCTGATTTAACGATGTCGCCGCCTCCACCACCTGCAGATAATTCTCCACCTCCTCAATCTAATCCTAGTCCTCCACCTTCAACTTCCTCTCCTCCTCCCCCTGACATAACTTCAGCTTCTCCACCTCCACCTTCTAAGGCCCCAACACCACCTTCACCGACGGGAGAGTCGCCTAATGTATCTCCCCCAGCCCCCAAGGTTTCTCCTCCTCCTCCTGATTCTCAATCTCCACCATCAGTTGAGGTCCCCCCACCAAGATCCTCAGTTCCATCACCTCCTCCTTCAGTCCCTTCATCATCTACTCCCCCTCCAGTTACTGTTCCTGGTTCTCCATCTAATTCATCCGCTGAAGGCCCCATTAGCCCTCCAACTTCTGGTATACCCGAACGACCGATTCCAACAATGAATGGTACTGACATCACTGTAAAGAAAGGGGGTCTCAACATCGTAACATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGGTATGTGGTTTGTTCTGAAACGGAAGAGAAGAAAGAAGAGTATCCCTTACACCATGCCTTCTCCTTTTTCCTCCCAAAACTCAGATTCAATTTTCTTAAGGCCCCATTCTTCAGCTCCCATGGCAGGCAGTCGTACCGATAGTGAATTCAAGTATTCACCATCTGAAGGAGGTGGAGTAGGTAATTCAAGATCATTTCCTTATGAAGAGCTACACCAGGCAACGAGTGGATTTTCGTCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGCACCCTTGCAGATGGAAGAGAGGTAGCCGTTAAACAACTTAAAGTGGGTGGTGGTCAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTCGGTTACTGTATTTCTGATCATCAAAGATTGCTCGTCTATGATTATGTTCCAAACAATACCCTTCATTACCATCTGCACGATGCGAACAGGCCGGTGTTGGCTTGGGCTACACGTGTTCGAATCGCTGCTGGTGCAGCCCGTGGAATTGCTTACCTACATGAAGATTGCCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTCGATATCAACTTCGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCGCTGGATTCGCATACACATGTAACGACTCGTGTAATGGGAACCTTTGGATACATGGCTCCAGAATACGCAACAAGTGGAAAATTGACAGACAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTACCGGTCGCAAGCCTGTAGATTCTTCTCAGCCTTTAGGGGACGAGAGCTTAGTCGAATGGGCTCGACCGTTGCTAGCACAAGCTATCGAGGACGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGAGAACAGTTACGTTGACAGAGAAATGTTTCGGATGATCGAAGCAGCCGCTGCTTGCGTTCGCCATTCGGGAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCATTGGATGAAATGTCTGATCTCGCAAATGGGGTGAAGCCTGGACAAAGTGGAGTGTTTGATTCAGCTGAACATTCTGCTCAGATCAGAATGTTTCAAAGAATGGCTTTTGGGAGTCAAGATTACAGTTATGGTTACTCGGATCGAGATCGAAGTCGGAGTTACAGTCAAACTCCGAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGCCCCTCGGCACCTATGAATCGATCCCGACAATGGAACATCTGA | 4692 | 47.53 | MLKKLRRNFRTFKTLISKTFNNSQSSSSSPSKPYKFPPLPLPLSPSEMSSPSQSFRQSLPPAVAPFPQTQSTVLPDPSNFFAPHLLSSPLPTNSFFQNFTVKNGDQPEYIHPYLIKSSLSEVSISYPSMFSNTAFGYQVFNADWTVSENPASVSQKPHIISSFSDLSLILDTPSGNLRFFLVRGSPFFTFEVFNNTPISISTIHAILSFSSNSSLTKFTVTLNNNQTWLIYSSSPINLTHSLSQITSGGFSGIVRIAVLPSPHLESILDRFCSCYPVSGEVNFRNPSSLEYKWEKNGWGNLLMLAHPLHLRLLSSDDSAIVLDDFKYKSIDGDLVGVVGGSWVLKPDPVSITWHSINGIGEEFQSEIISALVKDVEGLKSSPITTTSSYFYAKAIARAARLALIAEEVNFLQVIPEVRKFLKDAIEPWLRGTFNGNGFLYDSKWGGLVTQQGASDSGADFGFGVYNDHHYHIGYFLYAIAVLVKIDPAWGRKFRPQAYSLMADFMNLSRKSSSKFPRLRCFDLYKLHSWASGLTEFADGRNQESSSEAVNAYYSAALLGLAYGDTHLASIGSTLTALEIKAAQTWWQIRGGENLYETDFARENKVVGVLWSNKRDSGLWFAPPDWRECRLGIQLLPLLPITEALFSDAAFAKELVDWTLPSLRREGVGEGWKGFAYALQGIYDKDGAVQNIRNLKGFDDGNSLSNLLWWVHSRGGGGDEGEGLGGQPKSQMGNLKIVNFTRSFWPLCMCELNIGSSKSHPRFVKPPPIIVTRGYFWGYRVDFRDSIFELRIRSQRGISSLQREGSVNWIMASSPSPSVSPPENPSDSAFFSPPSPSPPAESAISPTSSEPNQTGEPPSSPSTSSAPPPQSPPADAPPPSPPLSPPPLTASPPVPPESPPPPPPPSPPLSSPSPPPPSTSTSAPPPSTSTSPPPPPTSSASPPPPDQSTASPPRDASPSPPDLTMSPPPPPADNSPPPQSNPSPPPSTSSPPPPDITSASPPPPSKAPTPPSPTGESPNVSPPAPKVSPPPPDSQSPPSVEVPPPRSSVPSPPPSVPSSSTPPPVTVPGSPSNSSAEGPISPPTSGIPERPIPTMNGTDITVKKGGLNIVTSVAVGSVVGVLVLSLVIMGMWFVLKRKRRKKSIPYTMPSPFSSQNSDSIFLRPHSSAPMAGSRTDSEFKYSPSEGGGVGNSRSFPYEELHQATSGFSSNNLLGEGGFGCVYKGTLADGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDHQRLLVYDYVPNNTLHYHLHDANRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLENSYVDREMFRMIEAAAACVRHSGVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEHSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQTPSSWSRESRDQSPSAPMNRSRQWNI | 1563 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 18961285 | 18970092 | + | CmaCh04G028390.1 | Cma04g02839 | 293920 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g02839 | 1563 | ProSiteProfiles | Protein kinase domain profile. | 1206 | 1467 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g02839 | 1563 | Pfam | Glycosyl hydrolase family 81 N-terminal domain | 87 | 353 | IPR040451 | - | |
Cma04g02839 | 1563 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1212 | 1234 | IPR017441 | GO:0005524 | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 20 | 61 | - | - | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 841 | 859 | - | - | |
Cma04g02839 | 1563 | Pfam | Protein tyrosine and serine/threonine kinase | 1209 | 1479 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 1529 | 1563 | - | - | |
Cma04g02839 | 1563 | Gene3D | - | 80 | 271 | - | - | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 860 | 1068 | - | - | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 1143 | 1187 | - | - | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 1146 | 1162 | - | - | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 812 | 1097 | - | - | |
Cma04g02839 | 1563 | PANTHER | ENDO-1,3(4)-BETA-GLUCANASE 1 | 65 | 718 | IPR005200 | GO:0052861 | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 817 | 840 | - | - | |
Cma04g02839 | 1563 | SMART | serkin_6 | 1206 | 1447 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 1525 | 1563 | - | - | |
Cma04g02839 | 1563 | MobiDBLite | consensus disorder prediction | 46 | 61 | - | - | |
Cma04g02839 | 1563 | PANTHER | ENDO-1,3(4)-BETA-GLUCANASE-RELATED | 65 | 718 | - | - | |
Cma04g02839 | 1563 | Pfam | Glycosyl hydrolase family 81 C-terminal domain | 361 | 709 | IPR040720 | - | |
Cma04g02839 | 1563 | Gene3D | Phosphorylase Kinase; domain 1 | 1179 | 1281 | - | - | |
Cma04g02839 | 1563 | SUPERFAMILY | Protein kinase-like (PK-like) | 1189 | 1479 | IPR011009 | - | |
Cma04g02839 | 1563 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1326 | 1338 | IPR008271 | GO:0004672|GO:0006468 | |
Cma04g02839 | 1563 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1282 | 1494 | - | - | |
Cma04g02839 | 1563 | CDD | STKc_IRAK | 1212 | 1482 | - | - | |
Cma04g02839 | 1563 | PRINTS | Proline rich extensin signature | 884 | 900 | - | - | |
Cma04g02839 | 1563 | PRINTS | Proline rich extensin signature | 870 | 882 | - | - | |
Cma04g02839 | 1563 | PRINTS | Proline rich extensin signature | 904 | 916 | - | - | |
Cma04g02839 | 1563 | PRINTS | Proline rich extensin signature | 923 | 944 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02839 | Cma15g00198 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02839 | Cma-Chr4:18961285 | Cma15g00199 | Cma-Chr15:969569 | 0 | dispersed | |
Cma09g01289 | Cma-Chr9:8888752 | Cma04g02839 | Cma-Chr4:18961285 | 0 | transposed | |
Cma15g00198 | Cma-Chr15:963133 | Cma04g02839 | Cma-Chr4:18961285 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68559 | PF17652 | Glyco_hydro81C | 2.20E-103 | CL0059 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g02839 | K01180 | - | csv:101211418 | 1228.39 |