Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02840 ATGGGAGAAGAACGAGCGGATTCACAGAGGCTGAAGAGAGCAGCAGCGGCAGCTTACGACTACGAGAACGATCCCAGATGGGCTGATTACTGGTCTAACGTTCTGATCCCTCCTCACATGTCTTCCCGCCCCGATGTTGTTGACCACTACAAACGCAAGTTCTACCAGCGCTACATCGACCCTGAATTCGTGGTAGAGGCCATGTCTTCTAGTAGTTCTACTCAGTCATCCCGACCTTCAGCAACATCTTCTGCAGTACCCCCTCCTACTAATGATCGAAGCCAACCGCGAAGTTCAGGATCAACGACTCGGACTTCAGGTACATCTGCAAGTGCAGATCCTAATCCAACCCCGTTACGCTGGGATCGACAAACAATCCAGTTTTCTGTCAACGCATGGGTGTTCATTGTGGCAGTGCTGGCAATTTTCCCCCTAATTCCCAAAAATCTTTCACAGAGGGCATATAGGCTTTCTTTTATGGGCACAGCTTGTTCTTCTTTATATTCTTTGTACTCATTGTATGGGAAGCCCAGGGCATGGAATTTGCAATCATTGCAAGCTTATTTCCAGTCCATAATTGCAACAAAAGATTTCATTTCCTTCACTTACTGTATCACCTTTGTGACTTCAAATATTTGTCTCAAATTTGCTTTAATTCCTATCCTGTGTCGGGCTGTTGAACATGTTGCAAAGTTTCTTAGGCGTAATTTTGCACGTTCGTCCTTATACAGGAAATATATGGAAGAGCCTTGCGTATGGGTGGAGTCAAATTCCACTACTCTTAGCATCCTATCTTCGCAGGCTGAGATTGGACTTGGATTCATTTTAATCATCTCTTTGCTCTCGTGGCAACGTAACTTCTTACATACATTCATGTACTGGCAGCTGCTAAAGCTCATGTATCATGCTCCTGTCACTTCTGGGTATCATCGAAGTGCCTGGGCCAACATTGCGAGTATCATTTCTCCGCTGATCTACCGCTATACTCCGTTCCTTAATACTCCTCTTTCAATGGCGCAAAGATGGTGGTTCAGGGAAAAAGATCTGAATCGTACGGCCAGAACTCATCCATTTACTACGCCGCCCGGATCAATTGATCTGTCCTCGCTCGTCGTCATGGTCTGGCGGATCTTTTCCAATTTCCGGCTCCGGCAGATCTCTCTTGCAATCGCTTTACCTTCTTCCGCTTATCTTTTTCCAATTCAGGGTCCGAATTCTACTGACCCACTC 1230 46.1 MGEERADSQRLKRAAAAAYDYENDPRWADYWSNVLIPPHMSSRPDVVDHYKRKFYQRYIDPEFVVEAMSSSSSTQSSRPSATSSAVPPPTNDRSQPRSSGSTTRTSGTSASADPNPTPLRWDRQTIQFSVNAWVFIVAVLAIFPLIPKNLSQRAYRLSFMGTACSSLYSLYSLYGKPRAWNLQSLQAYFQSIIATKDFISFTYCITFVTSNICLKFALIPILCRAVEHVAKFLRRNFARSSLYRKYMEEPCVWVESNSTTLSILSSQAEIGLGFILIISLLSWQRNFLHTFMYWQLLKLMYHAPVTSGYHRSAWANIASIISPLIYRYTPFLNTPLSMAQRWWFREKDLNRTARTHPFTTPPGSIDLSSLVVMVWRIFSNFRLRQISLAIALPSSAYLFPIQGPNSTDPL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18970672 18975814 + CmaCh04G028400.1 Cma04g02840 293921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02840 410 MobiDBLite consensus disorder prediction 70 118 - -
Cma04g02840 410 Pfam Transmembrane protein 33/Nucleoporin POM33 124 318 IPR005344 GO:0016021
Cma04g02840 410 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 6 345 - -
Cma04g02840 410 PANTHER OS01G0604700 PROTEIN 6 345 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00392 Cma04g02840 CCT
Cma04g02840 Cma15g00197 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00197 Cma-Chr15:957473 Cma04g02840 Cma-Chr4:18970672 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02840 K20724 - csv:101211899 599.742