Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02891 ATGACTGTAGAGATAGTTCAGAGGAAGAGGAAGTCACGGAGTGGACGAGACCCATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAGGCTTATAATGAGTGTGTTAATTCTTGTGATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCGAAAGGATCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCCATGAATTCAAATTGTAATTACAGAGGTGTGAGGCAGAGGACTTGGGGAAAATGGGTTGCGGAGATTCGTGAGCCTGATAGAGGTAGTAGGCTGTGGCTTGGTACTTTTTCTAATGCCCTTGAAGCTGCTCTCGCCTATGACGAGGCTGCCAGGACCATGTATGGGCACACTGCTCGTTTGAACCTTCCCAAAATTACAAACACAGGACTGCTAGCAGGCTCTGCCTCGGATTCTTCAACCACCACGTCGACGACAACCACATCATCGAACCAATCTGAGGTCCGTGTGTCTGAGGAGCTTACAATGACGCCACAACCCGTCCCCCCAGACGTTAAGATCGAAGGTGAGCCGAGGACTGGGTTCCCGGTTGATCACATTGCGACATCGGCGTTGGATGCTAAATTTTGTGACCAAGGCAATGATCAGGCAGCTCTGTTAGGGATTGAATTTCCCAGATTGGATCACTTCCCGAACTTTCAAATGGATGAAATGTACGAGTTTAGGACTAATGACATTGCAATGCCAGTGAGCTTAGAGAAGAAAGTGAAGCATGAAAGTGTCGATGGCGAATATCCCGATTGGAGCAGTGATCCATTCGACATCCAGGATGTGCTGCAGGACTTTCAAATAGATGAAATGTTTGATGTGGAGGAGCTTCTAAGCATTATAAATAGTGATTCCATGCATGATCAAAGCTTCTTGCAAGGGAATGTGTATGATTCTAACAACATGGTGCCTCCCCAACCATCAAGCTTATCGAATCAGGTCCGATACCCCGACGAGAAGCTGCTCGGAAGCCTGCAACACATGGAGCAAGCTCCAGCCGACGTCAATCATGGGTTTGATTTCTTGAAGGAGGGGAGGGAGGAGGATCTGAATGCTGCAACAGATGATTTTGCAAGATACTTGAATTATGAGATGGGTGGTTAG 1122 47.5 MTVEIVQRKRKSRSGRDPSTVAETLAKWKAYNECVNSCDDGSKPIRKAPAKGSKKGCMKGKGGPMNSNCNYRGVRQRTWGKWVAEIREPDRGSRLWLGTFSNALEAALAYDEAARTMYGHTARLNLPKITNTGLLAGSASDSSTTTSTTTTSSNQSEVRVSEELTMTPQPVPPDVKIEGEPRTGFPVDHIATSALDAKFCDQGNDQAALLGIEFPRLDHFPNFQMDEMYEFRTNDIAMPVSLEKKVKHESVDGEYPDWSSDPFDIQDVLQDFQIDEMFDVEELLSIINSDSMHDQSFLQGNVYDSNNMVPPQPSSLSNQVRYPDEKLLGSLQHMEQAPADVNHGFDFLKEGREEDLNAATDDFARYLNYEMGG 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19169439 19171475 + CmaCh04G028910.1 Cma04g02891 293972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02891 373 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Cma04g02891 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 292 - -
Cma04g02891 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 292 - -
Cma04g02891 373 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Cma04g02891 373 MobiDBLite consensus disorder prediction 136 160 - -
Cma04g02891 373 Pfam AP2 domain 69 120 IPR001471 GO:0003700|GO:0006355
Cma04g02891 373 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
Cma04g02891 373 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700|GO:0006355
Cma04g02891 373 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Cma04g02891 373 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Cma04g02891 373 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00128 Cma04g02891 CCT
Cma04g02891 Cma15g00145 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02891 Cma-Chr4:19169439 Cma20g00645 Cma-Chr20:2991403 1.09E-44 dispersed
Cma15g00145 Cma-Chr15:681336 Cma04g02891 Cma-Chr4:19169439 6.01E-129 wgd
Cma03g00323 Cma-Chr3:4040777 Cma04g02891 Cma-Chr4:19169439 1.93E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34995 PF00847 AP2 2.50E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02891 - K09286 cpep:111785488 669.463