Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02894 ATGAACAATAGGAGGACTTGTTGTCAAACTTTGTGGGCAGTCTCCTCTCATATCTCTCTTGCAAAATTTCAACTTTTTTGGTTCTTTTGGAGGGTTCTTAGGACAGCAGCAGCAGCAGGCATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAACCAAAGAAATTCGCCAAAGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGCAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAAATGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAGGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGGGTGTTTTGGAAAGTTGTGTTGTTAATATATTCATGACAAAAAAGAAAGGAAAAAGGGTGGATGGGATTGGTGGTTGTGTAGATAAGAGTAAGAAAGAGGCGGCCGAAATAAGTCTCTCACGTTCTAGTTTTATGGACGACCACTCACCTTCCTCCTCTTTCCCTCACCCTCCCCGAGACCACCCTTCCTCTTCCTCTTCCTCTCCATCTCCCTCTCCTGACCCTAATTCCCCATTATTACCTCCCCCAAACCCTCCCCCTCCTCCTCCTCCTTCCACCTCCGCCAACACTACCCCTTCTTCTCCCACACCCACCAATGGCGCCCGTAAAAGAAAAGGCAAGGGCGGCCCCGACAACAACAAGTTCCGCTACCGCGGCGTCCGCCAACGCAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAACGCACCCGCAAGTGGCTCGGCACTTTCTCCACCGCTGAAGACGCCGCCCGTGCCTATGACCGAGCCGCTATCATCCTCTACGGCTCCCGAGCTCAGCTTAACCTCCAAGCCTCCTCCTCCTCCTCCCATTCCTCCTCCTCTTCCCAATCCTCCTCTCGCTCCAACAACCTCCAGACTCTCCGCCCTCTCCTTCCCCGCCCTGCCGCCGCCGCGGCGTTCTCCTTCTCCTCCATGGCTTCCTCTCTCCCTATTATGACATCTCATCACTCCTCCTCCTCCTCCAACTCTTCTAATTTTCTCCCTTATGGGGTTTATCCATCTCCTGGATTCACCCTAATGTGTCCCAATCTAGTGCATCAATACCCACCCCAACTTACCCAACACCCCCACGCCTTTTCCGCTCCCTCAAATGAAATTCCATCCACTTCCACTGTTACTACCACTATTGCCACTCCATCCCAACCTTCCACAACCTCGTACCACCAAAACCCTAATCCCCTACTTGTTGCTTCCCCTCAAATTAACCCCACGCCAGTTGCACCACCTCCGCTCGTTTCAGATCTGGTTGTTGGGCCCATTGGGCCTGGATCTCCGGCGGTGGGCTGGCCGTTGGAGAATGATGAAGATTATCTTCCTTCTCTTTGGGACTACGGTGATCCTTTCTTCTTTGACTTGTGA 1632 51.41 MNNRRTCCQTLWAVSSHISLAKFQLFWFFWRVLRTAAAAGMRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANNNNTSSSSSSSSSSLGVLESCVVNIFMTKKKGKRVDGIGGCVDKSKKEAAEISLSRSSFMDDHSPSSSFPHPPRDHPSSSSSSPSPSPDPNSPLLPPPNPPPPPPPSTSANTTPSSPTPTNGARKRKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQASSSSSHSSSSSQSSSRSNNLQTLRPLLPRPAAAAAFSFSSMASSLPIMTSHHSSSSSNSSNFLPYGVYPSPGFTLMCPNLVHQYPPQLTQHPHAFSAPSNEIPSTSTVTTTIATPSQPSTTSYHQNPNPLLVASPQINPTPVAPPPLVSDLVVGPIGPGSPAVGWPLENDEDYLPSLWDYGDPFFFDL 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19177494 19182982 + CmaCh04G028940.1 Cma04g02894 293975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02894 543 Pfam AP2 domain 297 345 IPR001471 GO:0003700|GO:0006355
Cma04g02894 543 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 250 541 - -
Cma04g02894 543 MobiDBLite consensus disorder prediction 236 271 - -
Cma04g02894 543 MobiDBLite consensus disorder prediction 213 300 - -
Cma04g02894 543 SMART rav1_2 297 360 IPR001471 GO:0003700|GO:0006355
Cma04g02894 543 PRINTS Ethylene responsive element binding protein signature 298 309 IPR001471 GO:0003700|GO:0006355
Cma04g02894 543 PRINTS Ethylene responsive element binding protein signature 320 336 IPR001471 GO:0003700|GO:0006355
Cma04g02894 543 ProSiteProfiles AP2/ERF domain profile. 297 354 IPR001471 GO:0003700|GO:0006355
Cma04g02894 543 CDD AP2 297 355 IPR001471 GO:0003700|GO:0006355
Cma04g02894 543 Coils Coil 131 158 - -
Cma04g02894 543 MobiDBLite consensus disorder prediction 356 375 - -
Cma04g02894 543 MobiDBLite consensus disorder prediction 285 299 - -
Cma04g02894 543 SUPERFAMILY DNA-binding domain 297 355 IPR016177 GO:0003677
Cma04g02894 543 Gene3D AP2/ERF domain 296 355 IPR036955 GO:0003700|GO:0006355
Cma04g02894 543 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 250 541 - -
Cma04g02894 543 ProSiteProfiles LOB domain profile. 51 152 IPR004883 -
Cma04g02894 543 Pfam Lateral organ boundaries (LOB) domain 52 149 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02894 Cma15g00140 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02894 Cma-Chr4:19177494 Cma05g00742 Cma-Chr5:4237544 1.24E-45 dispersed
Cma15g00140 Cma-Chr15:668330 Cma04g02894 Cma-Chr4:19177494 2.66E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34996 PF03195 LOB 2.00E-38 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02894 - K09286 csv:101216152 278.87