Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02907 ATGAATCGTAGTTTTAGGGCTTTGGAATCGCAAATACAAGCTCCGGCAAAGCCGCGGCAGCAGCAAGTTGGAGGACTAAGGGCGTCGGTTATGAAAGATAAGGAGGAGGAGCTTGCGTTGTTTTTAGAAATGAGAAAGCGTGAGAAAGAGAGGAATGATCTTCTCTCTAATAACGTGGAAGAGTTCGATGCGCCTTTAGGAACAAAACCAGGAACTTCTCCAATATTTAATATCTCATCAGCTACCCCAGCCCCTACTCGCAAGACTGGTGCCGATGATTTTCTTAATTCTGACAATGATAAAAATGATTATGATTGGCTTCTAACTCCTCCTGGAACTCCTCTTTTTCCATCTTTGGAACCAGACTCAGAAAGGGTCTTAATGAGACATGCTACTCCAATGGGTCGATCCAATGTGCTGAAATCTAGACTCGGAAATCTCCAACAAGAACCTACTACTACGAGGAGCAACTTGGTCCCAAAACAAGCAACTTCTTCTCCAGGATTGAACTCCTCAAGTGTAGGCACACGTCGTCCTTCATCATCCGGAGGTCCTGGATCAAGACCTGCTACCCCAACTGGACGCCCTACATTAACCACAACATCTAGAACTTCCAGATCCTCAACGCCTACTTCCCGTGCAACTTTGCCTTCAAATAAACCAGTAGTTTCCTCGGCTAAGCTTGCAGCAACTTCTAATAAGCTGGCAGTTGCCTCAACCAAGCCAACAGCTACCATGAGTAAGCCTACTGTTTTATCTGCTAGGTCCTCAGTTCCTTCAAGATCTTCTACTCCAACAAGAACAGCAAGATCATCAACCCCGACTTCCAGACCTACTGTACCTCCAGCTAAGCCCACATCAAGGGCCTCAACTCCAACTCGTCGGCCATCCACACCATCTAGTGCACCAAGTGCACCTGTTTCCTTAGTCAAGTCTTCATCATCAATTTCAAGGCCATCCCCAACAGTGTCAAGGAATCAAGCACCATCAAGGGGAGCTTCCCCAACAGTAAAATCCAGACCATGGAATCCTTCAGAAATGCCTGGTTTCTCACTCGATGCTCCACCCAATTTAAGAACATCACTTCCTGAAAGGCCACTTTCAGCCACAAGGGGTCGGCCTGGAGCACCCAGTGCACGATCTTCTTCTGTAGAACCTGTTCCGAATGGTAGGCCAAGAAGACAATCTTGCTCTCCGTCTAGAGGACGTGCACCTAATGGAAGTATTCATCTCAGTGGAGGTTCTGTCCCTGCAATTAACCGTATGCATTCTAAAGCTAATGACAACATAAGCCCTGTATTAATAGGGACGAAAATGGTTGAAAGGGTAATAAGCATGCGCAAATTGGTCCCTCCCAAGCAAGATGACAAACATTCACCTCATGGGAATCTGTCTGGGAAGTCTTCATCACCAGATAGCACTGGCTTTGGGAGAACACTATCTAAGAAGTCTCTGGATATGGCAATAAGACACATGGATATAAGACGAAGCATTCCAGGTAATTTACGCCCATTGATGACAAATATTCCAGCTTCTTCAATGTATAGCGTACGGTCTGGGCCATCTCGAAGCAGAAATATCAGTGTTTCAGACTCACCTCTTGCCACGAGCAGCAACGCTAGTTCTGAAATGAGTGTGAATAATAATGGACTCTGTCTAGATTCACATGAAATTGACGACGAAATTGGCAGCGAGAGAGGAGGTCGATCACCCCGCAGCTTGTGTGCTAGGGCGTCAAACGGTCAAGGTATGGTCGCGAGGTCCCTGTGGCGCGCCGGAGCGAAGGTCGCGATGGCGGCCACCGCAATAGGTGGTGGTGCCGCAGCGGCCTCCATAGCTGCCTCCGACGACCCTTCTATGGCTCTTAAGCTCTGCACCACCGTCCCGGTCCGCCTCGTTCGCCTTTCGTTTACCGTCGCAACCGTTGCCTTCGATTACGAATATTCACTGTGGAGATTTCCTGAAGGGAGTAGTGAGAGGGAAAAAGTTAAGCATGAAGTACACCTTAGATCTGCTCGCAGAATTCAAGAGTTATGCTTCAAAAATGGAGGAATATATATTAAGCTTGGTCAGCATATCAGTCAGTTGGAGTATTTGGTGCCCCAAGAATATGTCCAGATAATGAGAGAATATATGTTGAACAGATGCCCAGTATCCCCATACGATCAAGTGTGTGAAGTGGTCAAGAGAGAGCTTGGTGAAACACCGGATAAGATCTTTTCTGAATTTAATCCTGATCCAATTGCTAGTGCTTCCCTTGCTCAAGTGCATGTTGCTCGCACCCACGATGGGCAGAAAGTTGCTGTGAAGGTGCAGCACACTCATATGACTGATACTGCGGCTGCAGATCATGCTAGTGTTGCATTAATTGTGAATACCATATATCGACTTTTTCCTTCTGTTGATTATAGTACCGTTATTGACTCAGTTTTATCTCCTCCTCAGGAACTTGATTTCTTAGGTGAGGCCAGGAACAGTGAGAAATGTCTGGATAACTTTCGAAAGTTGTCTCCTCATATTGCGGACTATGTGTATGCTCCAAAGGTCTATTGGAACTTAAGTACCTCAAAGTTATTGACCATGGAGTTTATGGATGGTGCTCAAATAAATGATGTTCGGGCCATTCAGAGGCTTGGGATTCAACCATCAGAAGTTGCAAAATTAGTTAGTCATACATTTGCTGAGATGATATATAAGCATGGATTTGTGCACTGTGACCCTCATGCTGCAAACTTGCTTGTTCGTCCCTTGCCTTCTGGCAAAAGGAGCATATGTGGCAAGAGGAAGCCACAGTTAGTACTTTTGGACCATGGGCTGTACAAAGTTCTCGACTCCAACATAAGATTTAACTATGCTGCCCTTTGGAAGGCTTTAATATTTTCTGATGCTGAGGCAATAAAGGAAAACAGCAAGAAATTGGGTGCTGGGGAAGATCTTTATGCACTGTTTGCTGGAATTCTTACCATGAAACCTTGGAATCGAGTTGTTGACCCAGCAGTTGACCATTTAGTCATTCAAGGAACTGACGATGAACGTTCAGAACTACAGATGTATGCTTCACAGTATTTCCCCCAAATCTCAGAGCTCCTTAGGAAATTACCACGTGTAATTTTGTTGATGCTGAAGACAAATGATTGTTTGAGGGCGGTTAACAATTCTCTGTTGCAGGGATCTTCCCTGGAGACATTCCTCATCATTGGGAAGGTATCATCTGAAGCAGTTATCGAGGCAAAATTAGCAGAAAATAAGTCGTTTGCATGCACATGCGGGTGGAGATTGCATGTTGATGGTAATTGTACATTGCTTGTATCAGTTATGTTCCAAAAGGCAGTTAATGGAGTTGCAATAGATCCCAGTTCTGAAACAGATTCTGTTGAGTCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCAAAAGAGCTGCATCTTCGACAAGTGGCAGTTATGGGCTTGCCTGCTTGTTTTAACCAAAGAACGCGACTTGAAATTCAGGCTGACGCTGCATTTGTTGATCTACGATCTAGAAGTCAATACTTCTATGAATTTGGATGCAAAATCGCACCATTGGTTGGTGATAGAACAATCGGTTCTTGGCTTTTATCCACGTTCAAAAGTAGGTACAAGGAAGTTTTGACCAAGGCTCACACTGCAGTGTTTGCTGCAAGTTCAAAATACTTGACAGTTCTATCAAAGGAAGAAACTAAAATGTATGAGGCAGCCCAGTCCTCTATGACAGCCTTTAAGAAATGGCGAATCGGTGGGCCTAGATTTCAGAAAGCATCCTTTCTTGGGAGGAAGAGGAAGTCTTCTGAGTAG 3816 45.13 MNRSFRALESQIQAPAKPRQQQVGGLRASVMKDKEEELALFLEMRKREKERNDLLSNNVEEFDAPLGTKPGTSPIFNISSATPAPTRKTGADDFLNSDNDKNDYDWLLTPPGTPLFPSLEPDSERVLMRHATPMGRSNVLKSRLGNLQQEPTTTRSNLVPKQATSSPGLNSSSVGTRRPSSSGGPGSRPATPTGRPTLTTTSRTSRSSTPTSRATLPSNKPVVSSAKLAATSNKLAVASTKPTATMSKPTVLSARSSVPSRSSTPTRTARSSTPTSRPTVPPAKPTSRASTPTRRPSTPSSAPSAPVSLVKSSSSISRPSPTVSRNQAPSRGASPTVKSRPWNPSEMPGFSLDAPPNLRTSLPERPLSATRGRPGAPSARSSSVEPVPNGRPRRQSCSPSRGRAPNGSIHLSGGSVPAINRMHSKANDNISPVLIGTKMVERVISMRKLVPPKQDDKHSPHGNLSGKSSSPDSTGFGRTLSKKSLDMAIRHMDIRRSIPGNLRPLMTNIPASSMYSVRSGPSRSRNISVSDSPLATSSNASSEMSVNNNGLCLDSHEIDDEIGSERGGRSPRSLCARASNGQGMVARSLWRAGAKVAMAATAIGGGAAAASIAASDDPSMALKLCTTVPVRLVRLSFTVATVAFDYEYSLWRFPEGSSEREKVKHEVHLRSARRIQELCFKNGGIYIKLGQHISQLEYLVPQEYVQIMREYMLNRCPVSPYDQVCEVVKRELGETPDKIFSEFNPDPIASASLAQVHVARTHDGQKVAVKVQHTHMTDTAAADHASVALIVNTIYRLFPSVDYSTVIDSVLSPPQELDFLGEARNSEKCLDNFRKLSPHIADYVYAPKVYWNLSTSKLLTMEFMDGAQINDVRAIQRLGIQPSEVAKLVSHTFAEMIYKHGFVHCDPHAANLLVRPLPSGKRSICGKRKPQLVLLDHGLYKVLDSNIRFNYAALWKALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVVDPAVDHLVIQGTDDERSELQMYASQYFPQISELLRKLPRVILLMLKTNDCLRAVNNSLLQGSSLETFLIIGKVSSEAVIEAKLAENKSFACTCGWRLHVDGNCTLLVSVMFQKAVNGVAIDPSSETDSVESGSKVELPFWLAKELHLRQVAVMGLPACFNQRTRLEIQADAAFVDLRSRSQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLTVLSKEETKMYEAAQSSMTAFKKWRIGGPRFQKASFLGRKRKSSE 1271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19229427 19244317 - CmaCh04G029070.1 Cma04g02907 293988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02907 1271 SUPERFAMILY GINS helical bundle-like 1151 1252 IPR036224 -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 62 89 - -
Cma04g02907 1271 PANTHER ABC1 FAMILY PROTEIN 1235 1270 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 450 479 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 137 420 - -
Cma04g02907 1271 CDD GINS_A_psf3 1151 1253 - -
Cma04g02907 1271 Pfam ABC1 atypical kinase-like domain 712 969 IPR004147 -
Cma04g02907 1271 PANTHER BNAC04G05270D PROTEIN 593 1189 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 72 86 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 1 18 - -
Cma04g02907 1271 PANTHER BNAC04G05270D PROTEIN 1235 1270 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 1 26 - -
Cma04g02907 1271 Pfam GINS complex protein 1131 1234 IPR021151 -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 382 405 - -
Cma04g02907 1271 PANTHER ABC1 FAMILY PROTEIN 593 1189 - -
Cma04g02907 1271 Coils Coil 31 52 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 513 545 - -
Cma04g02907 1271 Gene3D - 1098 1253 IPR038437 -
Cma04g02907 1271 SUPERFAMILY Protein kinase-like (PK-like) 714 915 IPR011009 -
Cma04g02907 1271 SUPERFAMILY PriA/YqbF domain 1102 1152 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 463 479 - -
Cma04g02907 1271 MobiDBLite consensus disorder prediction 139 341 - -
Cma04g02907 1271 CDD ADCK1-like 712 974 IPR045307 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00358 Cma-Chr3:4236644 Cma04g02907 Cma-Chr4:19229427 2.79E-74 dispersed
Cma04g02907 Cma-Chr4:19229427 Cma07g01047 Cma-Chr7:5549026 9.85E-75 dispersed
Cma05g00072 Cma-Chr5:309547 Cma04g02907 Cma-Chr4:19229427 4.38E-14 dispersed
Cma07g01208 Cma-Chr7:6642364 Cma04g02907 Cma-Chr4:19229427 5.78E-26 dispersed
Cma01g00397 Cma-Chr1:2010216 Cma04g02907 Cma-Chr4:19229427 4.76E-63 transposed
Cma15g00131 Cma-Chr15:607567 Cma04g02907 Cma-Chr4:19229427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02907 K08869 - csv:101216868 882.093