Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02913 ATGGCGACGACTGAGAACACGGTTTTGCAATTTTCACAGTCTTCTAACTCTTTGTCTGCCAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCCGACCAGGCGGATCGAGTGATCGGTACACTTCTCGGCTCTGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCCGATCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTATGGGAGTTACAGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTTCAAACCCTATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGCACAATAAAAGCCTACATCTCTGTCAATTTGTCTCTGGGCGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTAGTATTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATTGATGATATTTACAAATATGTTGATAATGTTGTGGAAGGACATGTTGAGCCGGACAACACGATTGGGAGATTTCTTGCTGAGACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTGGGCTTGGCTGAAAAGTTGAACACGGCTGCTCAGATTCTGTAA 858 41.72 MATTENTVLQFSQSSNSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVSNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSIDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNTIGRFLAETVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLGLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19275471 19278743 + CmaCh04G029130.1 Cma04g02913 293994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02913 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 13 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma04g02913 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma04g02913 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Cma04g02913 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 284 - -
Cma04g02913 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma04g02913 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cma04g02913 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma04g02913 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma04g02913 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00164 Cma04g02913 CCT
Cma04g01128 Cma04g02913 CCT
Cma04g02913 Cma15g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02913 Cma-Chr4:19275471 Cma09g01047 Cma-Chr9:5438843 1.69E-09 dispersed
Cma14g00076 Cma-Chr14:359521 Cma04g02913 Cma-Chr4:19275471 1.66E-32 wgd
Cma15g00125 Cma-Chr15:582434 Cma04g02913 Cma-Chr4:19275471 0 wgd
Cma04g02913 Cma-Chr4:19275471 Cma06g00238 Cma-Chr6:1209242 1.40E-32 wgd
Cma04g02913 Cma-Chr4:19275471 Cma07g01062 Cma-Chr7:5686005 1.16E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02913 K03249 - csv:101205957 547.354