Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g02928 | ATGTCGACAATCCAAAACACCCACGTTGTCGCAATGGAAGAAGAGCAAGAAGAGCGGCCTTCCCGGGTTTCTACAGCTGGGACTGACGCTTCACCGGCGTCTGATGATGTGCGGCGGTGCTCGGTCCAGTCGAGTGCTGAGATTGTGGGGGCGGCGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTGGAATGTGGGTTAGGTGAGATTAAGGTACATTTGGCCAAAATGGAGAGAGATTGCCGTATTTGTCATCTGAGCTTGGATGCTACGAATCATGAATCTGGAATCCCCATTGAGTTGGGCTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGGTTAAGGGTGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTTGTGAAGCTGATTCGACCGAGCAGTGCAACGAGTCGAACGATGGAACGACAGCAACCACTGCAGCTGCTGTCGTGGTGCCACCACACTCTACAGAGACTCGAAACTTTTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTTGCTTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA | 648 | 50.0 | MSTIQNTHVVAMEEEQEERPSRVSTAGTDASPASDDVRRCSVQSSAEIVGAAVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVVVPPHSTETRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS | 215 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19321576 | 19324179 | + | CmaCh04G029280.1 | Cma04g02928 | 294009 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g02928 | 215 | Pfam | RING-variant domain | 88 | 139 | IPR011016 | GO:0008270 | |
| Cma04g02928 | 215 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Cma04g02928 | 215 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 80 | 146 | IPR011016 | GO:0008270 | |
| Cma04g02928 | 215 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 154 | IPR013083 | - | |
| Cma04g02928 | 215 | PANTHER | ZINC FINGER, RING-CH-TYPE | 3 | 215 | - | - | |
| Cma04g02928 | 215 | SMART | ringv_2 | 87 | 140 | IPR011016 | GO:0008270 | |
| Cma04g02928 | 215 | SUPERFAMILY | RING/U-box | 85 | 142 | - | - | |
| Cma04g02928 | 215 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 215 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g02928 | Cma15g00118 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02928 | Cma-Chr4:19321576 | Cma13g00092 | Cma-Chr13:684315 | 2.58E-35 | dispersed | |
| Cma14g00100 | Cma-Chr14:436891 | Cma04g02928 | Cma-Chr4:19321576 | 6.40E-74 | wgd | |
| Cma15g00118 | Cma-Chr15:544739 | Cma04g02928 | Cma-Chr4:19321576 | 6.35E-92 | wgd | |
| Cma04g02928 | Cma-Chr4:19321576 | Cma06g00260 | Cma-Chr6:1296853 | 1.54E-76 | wgd | |
| Cma04g02928 | Cma-Chr4:19321576 | Cma07g01034 | Cma-Chr7:5397563 | 6.96E-54 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g02928 | - | - | cpep:111788319 | 419.468 |