Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02928 ATGTCGACAATCCAAAACACCCACGTTGTCGCAATGGAAGAAGAGCAAGAAGAGCGGCCTTCCCGGGTTTCTACAGCTGGGACTGACGCTTCACCGGCGTCTGATGATGTGCGGCGGTGCTCGGTCCAGTCGAGTGCTGAGATTGTGGGGGCGGCGGTGGAGAAAAGAAGGGGATCCTCTGTGTCGGAGTGCTCTGTTGAGATGGATCTGGAATGTGGGTTAGGTGAGATTAAGGTACATTTGGCCAAAATGGAGAGAGATTGCCGTATTTGTCATCTGAGCTTGGATGCTACGAATCATGAATCTGGAATCCCCATTGAGTTGGGCTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGGCTTGGTTCAAGGTTAAGGGTGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTTGTGAAGCTGATTCGACCGAGCAGTGCAACGAGTCGAACGATGGAACGACAGCAACCACTGCAGCTGCTGTCGTGGTGCCACCACACTCTACAGAGACTCGAAACTTTTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTTGCTTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA 648 50.0 MSTIQNTHVVAMEEEQEERPSRVSTAGTDASPASDDVRRCSVQSSAEIVGAAVEKRRGSSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAHKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVVVPPHSTETRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 19321576 19324179 + CmaCh04G029280.1 Cma04g02928 294009
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02928 215 Pfam RING-variant domain 88 139 IPR011016 GO:0008270
Cma04g02928 215 MobiDBLite consensus disorder prediction 1 36 - -
Cma04g02928 215 ProSiteProfiles Zinc finger RING-CH-type profile. 80 146 IPR011016 GO:0008270
Cma04g02928 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 154 IPR013083 -
Cma04g02928 215 PANTHER ZINC FINGER, RING-CH-TYPE 3 215 - -
Cma04g02928 215 SMART ringv_2 87 140 IPR011016 GO:0008270
Cma04g02928 215 SUPERFAMILY RING/U-box 85 142 - -
Cma04g02928 215 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 215 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma04g02928 Cma15g00118 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02928 Cma-Chr4:19321576 Cma13g00092 Cma-Chr13:684315 2.58E-35 dispersed
Cma14g00100 Cma-Chr14:436891 Cma04g02928 Cma-Chr4:19321576 6.40E-74 wgd
Cma15g00118 Cma-Chr15:544739 Cma04g02928 Cma-Chr4:19321576 6.35E-92 wgd
Cma04g02928 Cma-Chr4:19321576 Cma06g00260 Cma-Chr6:1296853 1.54E-76 wgd
Cma04g02928 Cma-Chr4:19321576 Cma07g01034 Cma-Chr7:5397563 6.96E-54 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02928 - - cpep:111788319 419.468