Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02941 ATGGCGGATTGCCCCATTAAGCTCGCCATATTATTCGACTCTCAATTGCAGAGCAAGGTCTCCCGGGTTGCATTTCCAGTCGTTGGATTCACCCTGTCAACAGAAAGGACTGAGTTTATTAGATCAGCGAGGAACAAGGAGGCGGAAATCAAAGCGAGGAAGCTGGCTTTAGAAGCGGATTCTCCAACGGAAAGAACGAAATTCCGAGTAGCTTCCACTTGGTGCTTCATCGCCTTCATTTTTTTGGTCGAAATCATAGAATTTCAATACAAAATGAGAGAAGCAGAGAAGAAGTTGAGAAGTGAAGTTTACCCGAGGATTGGAAAAGGCGGGAATGGAGGGAGGAAGAGGAAGGATATGGCGAGTAGATGGTGGAGTGGAATTGGAATTGAAGATCAGCATGGAGCTAAAATCCACAGGCGCCGTCGAGGTCGCCCACCGGGCTCAAAAAACAAGCCAAGGCCACCCATTCTCAATACCAACCAAGCTCCCAACGCCTTCCAAACCCACGTATTCCAAATCACCCCCGCCACCGACATAGCCCATTCCATTTCCACCTTCGCTCACCGCCGCCACTGCGGACTCTCCATTCTCAGCGTCTCCGGCCTCGTCGCCAACGTCACTCTCCACCAACCCGCTGCCCCTGGCGGCGTCATCACTCTCCATGAACGCTTCGAGATCTTGTCACTCTCTGGTGCTTTCCATCCCGCACCGTCCCCCCAGTGGGCTACTAGCTTGACCGTCTGTCTAGCCGGCGGCCAGGGACGGGTCGTCGGCGGCCTGGTTTCCGGTCCCCTCATCGCCGCCGGCCCTGTGATAGTAATTGCAGCTTCGTTTACAAACGCTATATATGAAAGATTACAGATTGACGAAGAGGAAGAGAATGGAAACGAGGAAATGGATATGGAAGATCATAGTAATGGAAAAAATTCAGTGGGAGAATCATCAGGAGGAGCTTGTTTGGCAGTTCATAATTTGATTTCAAATACCCAAATTTCTGAAGATGTGTTTTGGGCTCAACTTCCTCCATCGCATTAA 1038 50.48 MADCPIKLAILFDSQLQSKVSRVAFPVVGFTLSTERTEFIRSARNKEAEIKARKLALEADSPTERTKFRVASTWCFIAFIFLVEIIEFQYKMREAEKKLRSEVYPRIGKGGNGGRKRKDMASRWWSGIGIEDQHGAKIHRRRRGRPPGSKNKPRPPILNTNQAPNAFQTHVFQITPATDIAHSISTFAHRRHCGLSILSVSGLVANVTLHQPAAPGGVITLHERFEILSLSGAFHPAPSPQWATSLTVCLAGGQGRVVGGLVSGPLIAAGPVIVIAASFTNAIYERLQIDEEEENGNEEMDMEDHSNGKNSVGESSGGACLAVHNLISNTQISEDVFWAQLPPSH 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19395948 19400182 + CmaCh04G029410.1 Cma04g02941 294022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02941 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 122 314 IPR014476 GO:0003680
Cma04g02941 345 MobiDBLite consensus disorder prediction 294 314 - -
Cma04g02941 345 CDD DUF296 168 279 IPR005175 -
Cma04g02941 345 ProSiteProfiles PPC domain profile profile. 164 303 IPR005175 -
Cma04g02941 345 Coils Coil 40 60 - -
Cma04g02941 345 MobiDBLite consensus disorder prediction 134 159 - -
Cma04g02941 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 165 292 - -
Cma04g02941 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 122 314 - -
Cma04g02941 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 281 IPR005175 -
Cma04g02941 345 Gene3D - 168 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02941 Cma-Chr4:19395948 Cma06g01130 Cma-Chr6:7608057 3.07E-50 dispersed
Cma15g00103 Cma-Chr15:479122 Cma04g02941 Cma-Chr4:19395948 1.62E-87 wgd
Cma04g01169 Cma-Chr4:5964845 Cma04g02941 Cma-Chr4:19395948 8.83E-61 wgd
Cma04g00200 Cma-Chr4:955547 Cma04g02941 Cma-Chr4:19395948 1.23E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02941 - - cmos:111457545 411.379