Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02947 ATGAGTTTTGTTTTCCGTGGAACACGAGTTCCAGACATAGAAAATGGTCTCCCTGGATTTATACCTGAGCGGCGTGCAATGCGTGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTTCTTCTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTAATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGTCTTCTGGGTCACACTGAATTGAGGTTGCATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATAGGGAATTTGATGATTTAGACTATGAAACTTTGAGAGCGTTGGATTCTGACAATGTTCCAACAACACCGTCAATGAGCGAGGAACAGATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCTGCTGCGAATCAACAGGCTTCATCTTCAGAATCCAATGAGAAGAGACCAGATTCAGTCAATGCGGTTAGCGGTACCAAGTCCTTGCAGGATGAACTTACATGCAGTGTTTGCTTAGAGCAATTCCATGCGAACTGCATAGATCCGTGGCTGGGGCAGCAGGGAACATGTCCTGTTTGCAAATTCAGAGCGGTGCCCGGGTGGTCGGAACAGGGGCAAGGGCAAACCGATGCTTATATGGTTTAA 783 46.1 MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDPAANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLEQFHANCIDPWLGQQGTCPVCKFRAVPGWSEQGQGQTDAYMV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19411306 19415093 + CmaCh04G029470.1 Cma04g02947 294028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02947 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 244 IPR013083 -
Cma04g02947 260 MobiDBLite consensus disorder prediction 171 204 - -
Cma04g02947 260 SUPERFAMILY RING/U-box 207 248 - -
Cma04g02947 260 MobiDBLite consensus disorder prediction 177 204 - -
Cma04g02947 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 259 - -
Cma04g02947 260 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02947 Cma15g00098 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02947 Cma-Chr4:19411306 Cma14g01878 Cma-Chr14:13298814 1.59E-06 dispersed
Cma15g00098 Cma-Chr15:462268 Cma04g02947 Cma-Chr4:19411306 1.21E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02947 K16283 - csv:101216306 439.499