Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02960 ATGGAGGAAAATTCAAGCTCTGTCACAGAATCAACGCTCACAACCGCCATGGAAGCAGAGCCTCAAGAAGAAGACAGAGACCCGGAAAGCAATCCTTTAAACCAACCTCTTCTCAAGAGAAGCAGAACTCTCTCTTCCAGTCCTCTCGCCATTGTTGGAACCAAAGTTTCTCTGATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAACATGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCGAAATGGACATTGGCTTGTCTTGTTGGACTTCTTACAGGAATCATTGCTACTCTCATCAATCTCGCCATTGAAAACATTGCTGGTTACAAGCTTTTGAAAGTGGTTGAATACATAAAAGAAGAAAGATACTTGATGGGGTTTGCCTACTTTACCACTGCCAATTTCCTTCTCACTTTGGTTGCTGCTGTTCTCTGTGTATGGTTTGCTCCCACTGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAATATGTTTGGCGCCACAACGCTGATCGTTAAGATAATTGGGAGCATTGGGGCAGTGGCAGCAGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTTGGGCAAGGCGGGACAGATAACTATAGAGTGAAATGGACATGGCTACGCTATTTCAACAACGATCGGGATCGTCGAGATCTCATCACTTGCGGGGCGTCTTCGGGGGTTTGTGCAGCTTTCCGAGCTCCAGTTGGGGGTGTTCTATTTGCTCTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCCTTGCTGTGGAGGACATTTTTTAGCACAGCCATTGTTGTGGTGGTGCTAAGAACATTCATTGAAGTATGCAAGGCTGGTGAATGTGGGCTGTTTGGTGAAGGAGGGCTTATAATGTTTGATGTCAGTGGCGTTTCTGTGAGTTACCGTATTATGGACATCATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGGAGTCTTTACAACCATCTTTTGCACAAAGTTCTGAGAGTATACAACCTCATAAACCAGAAGGGAAAAATGCAGAAGCTGTTACTAAGCTTAGGAGTTTCGCTCTTCACTTCAATTTGCCAGTACAGTCTCCCTTACCTTGTCCAATGCACTCCCTGCAACCCTTCTCTTCCAGATTCCGTTTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTTAACTGTCCAAAAGGCCATTACAACGACCTCGCTACCCTTCTCCTTACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAACACTCCGGCCGAGTTCCAGCCCCTTTCCCTTGTAATCTTCTTCCTTCTCTACTGCGTTTTAGGGTTAATCACCTTTGGCATTGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATCTTGATGGGATCTGGCTATGGCCGACTCATCGGCCTTCTCATGAAACCCTACACGAATCTCGATCAAGGACTCTTGGCTGTTCTCGGAGCTGCCTCGTTAATGTCCGGCTCGATGAGGATGACGGTTTCGCTCTGTGTTATATTCCTCGAGCTCACGAATAATCTCCTCCTGCTTCCGATTACGATGATTGTCCTTCTGATATCGAAAACCGTCGGGGACAGTTTTAACCCTAGTATTTATGAGATTATTCTGCACTTGAAGGGGCTTCCGTTCCTGGACGCAAATCCGGAGACGTGGATGAGGAACATCACCGTCGGCGATCTCGCCGACGCAAAACCGGCGGTGGTAACGCTGCGGGGATTGGAGAAAGTGTCTCGGATTGTGGAGGTTCTTAAGAACACGACGCACAATGGATTCCCTGTAGTGGACGCGGAAGCGGTGGTGCCGCCAGTGGGGATGGCGGTGGGCGCGACGGAGCTGCACGGAGTGGTATTGAGAAAGCATTTGCTGCAGTTGCTGAAGAAGAAATGGTTCTTGAGAGAGAGGAGGAGGACGGAGGAATGGGAAGTGAGGGAGAAATTTACATGGGTTGAATTGGCGGAGAGGGAAGGGAAGATTGAGGAACTTGCAGTGACGAAGGAGGAGATGGAAATGTACGTTGATCTTCATCCTCTGACGAACACAACGCCGTATACAGTGATTGAAAGCATGTCGGTGGCCAAAGCTCTGGTTCTGTTCCGGCAAGTGGGGCTTCGGCATTTGCTGATTGTGCCCAAATATGAAGCAGCTGGGGTTCCGCCAGTAATTGGGATATTGACGAGGCAGGATTTAAGGCCATATAACATCCTGACTGCATTTCCTCATCTAACCAGAATCAAAAGCAACCACAAAGGGAACTAA 2370 48.4 MEENSSSVTESTLTTAMEAEPQEEDRDPESNPLNQPLLKRSRTLSSSPLAIVGTKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVEYIKEERYLMGFAYFTTANFLLTLVAAVLCVWFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEVCKAGECGLFGEGGLIMFDVSGVSVSYRIMDIIPVAIIGLLGGFLGSLYNHLLHKVLRVYNLINQKGKMQKLLLSLGVSLFTSICQYSLPYLVQCTPCNPSLPDSVCPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTPAEFQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMKPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLISKTVGDSFNPSIYEIILHLKGLPFLDANPETWMRNITVGDLADAKPAVVTLRGLEKVSRIVEVLKNTTHNGFPVVDAEAVVPPVGMAVGATELHGVVLRKHLLQLLKKKWFLRERRRTEEWEVREKFTWVELAEREGKIEELAVTKEEMEMYVDLHPLTNTTPYTVIESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILTAFPHLTRIKSNHKGN 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19457891 19462237 + CmaCh04G029600.1 Cma04g02960 294041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02960 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC-A 25 783 - -
Cma04g02960 789 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 25 783 - -
Cma04g02960 789 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g02960 789 PRINTS Plant CLC chloride channel signature 276 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g02960 789 PRINTS Plant CLC chloride channel signature 290 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g02960 789 PRINTS Plant CLC chloride channel signature 308 315 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g02960 789 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cma04g02960 789 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 770 - -
Cma04g02960 789 Gene3D - 585 776 IPR046342 -
Cma04g02960 789 ProSiteProfiles CBS domain profile. 716 780 IPR000644 -
Cma04g02960 789 Pfam CBS domain 718 768 IPR000644 -
Cma04g02960 789 MobiDBLite consensus disorder prediction 1 18 - -
Cma04g02960 789 CDD ClC_6_like 60 582 - -
Cma04g02960 789 SUPERFAMILY CBS-domain pair 586 768 IPR046342 -
Cma04g02960 789 MobiDBLite consensus disorder prediction 1 36 - -
Cma04g02960 789 SUPERFAMILY Clc chloride channel 69 584 IPR014743 -
Cma04g02960 789 Pfam Voltage gated chloride channel 148 562 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 Gene3D Clc chloride channel 82 584 - -
Cma04g02960 789 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma04g02960 789 SMART cbs_1 719 772 IPR000644 -
Cma04g02960 789 SMART cbs_1 604 664 IPR000644 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02960 Cma-Chr4:19457891 Cma16g00762 Cma-Chr16:4173796 0 dispersed
Cma15g00080 Cma-Chr15:374045 Cma04g02960 Cma-Chr4:19457891 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02960 K05016 - csv:101210008 1425.22