Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g02974 ATGGAAGTTGAAACCCAATCGGAGTTTCCGTACTGGAAGCCTTTCCAACGGAGGTTCGACCCTGATTCTCCCTTCTTCGCCTCTGGTAATGTCGAGCGCGAAATCTTAGCCAAACAGGTTGCCTTGGATTTAACCGAAGATGAAAAGCTCCAGCTTCATAATATGGTAGTTGATGTCGGCAGGAAAATCTTTTGCCCAATAGTCGGTTGTGGTGCGCACTTGAAATCACTGGATGACTTTGAAGATCACTACAATTCACGGCATACTGCCTCTTGTTCAGTTTGCCCCCGAGTATATCCAACATCACGACTGCTTAGTCTGCATGTGTCTGAGGCACACGACTCGTTCTTTCAAGCCAAAGTTGCTCGTGGCTATGACATGTATGAATGCCTGGTGGAAGGTTGTGGTTTGAAGTTCAAGAGCTACAAAAGCAGACAGCAGCATCTAGTGGACAAGCATACGTTTTCTGCTTCATTTGAATTCTTTAAGAAGGCTCCTCCTTCTAAGAAACAAAGACAGAAATTATATCGTAAACAAGTACTTCAACCAAGGGAAGAAACTTCCAAAATGGAAGCCGAGAATGAAACCATGGATGGCCTCATTTTGGGAGTATCTAAACTAAGTACTTCGGGCTCAACTCCATCATCAGTCAGCTTTGGTCGAAGGCACACTCGAGGGTTAACGTTTGTTCCTCGAGCAGTTCAGCGTGATAAAATTCTTAACCTCATCAATGGGACGATTCGTAATTGCGGCGGTTGTGATTCCAAGGATAAGGGCGATTTCGGTTCCATTCAACCCCCTCCCAACCTCTCCGTCTCCTTTCCTAACAGATTCCCTTTAACCATCGAAAGTGCACACAAGAAAGGAGCTGGAAGCACCAAGAATGGCCGCGATTCCAAAGGCCAGAGGCTCGGCGTTAAAATCTTTGGTGATCAAGTCGCCAAGCCCGGTTCCATTATCGTCCGCCAGCGCGGAACCAAGTTCCATGCCGGAAAGAATGTGGGGCTTGGCAAGGACCATACAATTTTCTCATTGATTGATGGGCTTGTAAAATTTGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTGTACCCAAGAGAAGTGCAGCCTGAGAATCCCAACAGCTATAGAGCAAGGAAGAGGGAGTACTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGGAAGGAAGGCGTCGTTGCTCAAGCTCAACTAATATTAGCTTCCACTGATGCACCAAGAAGATACAGCCTGCTTTACGAGTCCAAGATTGTTGTCCTGTGTCTAATTCGTCAACGTTTCCCGTGCTATAACTATTTGCCAGTTCAATGTAGGGCTGTAGAAGAGGAAAGAAAAACAAGTAGCATAGACACGTCACTTGGATCACAGAAAAGGGAAGGGGGATACAAGCACATGGATAGCAACTGGATCTGA 1434 46.23 MEVETQSEFPYWKPFQRRFDPDSPFFASGNVEREILAKQVALDLTEDEKLQLHNMVVDVGRKIFCPIVGCGAHLKSLDDFEDHYNSRHTASCSVCPRVYPTSRLLSLHVSEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLVDKHTFSASFEFFKKAPPSKKQRQKLYRKQVLQPREETSKMEAENETMDGLILGVSKLSTSGSTPSSVSFGRRHTRGLTFVPRAVQRDKILNLINGTIRNCGGCDSKDKGDFGSIQPPPNLSVSFPNRFPLTIESAHKKGAGSTKNGRDSKGQRLGVKIFGDQVAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGVVAQAQLILASTDAPRRYSLLYESKIVVLCLIRQRFPCYNYLPVQCRAVEEERKTSSIDTSLGSQKREGGYKHMDSNWI 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19516973 19522816 - CmaCh04G029740.1 Cma04g02974 294055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g02974 477 SUPERFAMILY Ribosomal L27 protein-like 285 366 - -
Cma04g02974 477 PANTHER ZINC FINGER PROTEIN 511 4 237 - -
Cma04g02974 477 PRINTS Ribosomal protein L27 signature 312 336 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cma04g02974 477 PRINTS Ribosomal protein L27 signature 337 361 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cma04g02974 477 PRINTS Ribosomal protein L27 signature 287 311 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cma04g02974 477 TIGRFAM L27: ribosomal protein bL27 285 364 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cma04g02974 477 MobiDBLite consensus disorder prediction 455 477 - -
Cma04g02974 477 PANTHER UNCHARACTERIZED 4 237 IPR039258 -
Cma04g02974 477 Hamap 50S ribosomal protein L27 [rpmA]. 284 367 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cma04g02974 477 Coils Coil 377 397 - -
Cma04g02974 477 ProSitePatterns Ribosomal protein L27 signature. 317 331 IPR018261 GO:0003735|GO:0005840|GO:0006412
Cma04g02974 477 ProSitePatterns Zinc finger C2H2 type domain signature. 130 153 IPR013087 -
Cma04g02974 477 SMART c2h2final6 90 113 IPR013087 -
Cma04g02974 477 SMART c2h2final6 128 153 IPR013087 -
Cma04g02974 477 SMART c2h2final6 63 88 IPR013087 -
Cma04g02974 477 Gene3D - 289 398 - -
Cma04g02974 477 Pfam Ribosomal L27 protein 285 364 IPR001684 GO:0003735|GO:0005840|GO:0006412
Cma04g02974 477 ProSitePatterns Zinc finger C2H2 type domain signature. 92 113 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00113 Cma-Chr13:781147 Cma04g02974 Cma-Chr4:19516973 5.25E-25 transposed
Cma15g00076 Cma-Chr15:362866 Cma04g02974 Cma-Chr4:19516973 7.84E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35000 PF01016 Ribosomal_L27 2.70E-35 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g02974 - - csv:101212859 432.565