Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g03005 ATGGCCGAATCGGGCAGGGCCCGGGCAGCTTTAGAAGTTTATTCCAAAAAGTTACTTGCAGTTTCGGCCATAGAAATCAACCTCGGGACTGCAGATGCATGGCGGGCAGACAGAAATGGCTACGTCGGCGGAAAATGCACACCTCTGTGTAGTCATTTTCTACTGTTATTTAACTTAGATTCAGTCCATTTTACTCTTATGATTAGTCAACAGAGTATGAGCTCTTCATCCACTCAACTCTATGCTTCAAATATGGGTATCTATGAGCCATTTTACCAGATCAACTCATGGGGAACTGCCTACAGTCGTCCACTTTTATCGCCTATTATAAAAGTGGACGACTGTGTTGACAATAAACCCGAGTTAATTCCTTTTGAATCGATGGATCATCCTGAGAGCAGTCAAGAAATGAACAAACCAATTGATGATAAGGTTCAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTGGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAGCTGAAGGGTGTACACACAAGCTGTGTGGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAGTATAATCACTGGGTTGAGGAGCAACAGAGGCAGGTCACTGAACTGAGAAAAGCGTTGCAAGTTCATGTAACCGATATGGAACTCCAAATTTTGGTGGAGAGCAGCTTAAACCATTACCACAACTTGTTTTGCATGAAGGCAAATGTTGCAAAGGCTGATGTATTCTATTTAATGTCTGGAGTATGGAGATCATCAGCAGAGCGTTTTTTCCTCTGGATTGGGGGATTTCGCCCATCCGAGCTGCTAAACGTTCTGAAGCCATACTTCGGGCCGTTAAACGAACAACAAAGAGCCGATATCCACAAGTTGCATCAGTCGTCTCGGCAAGCCGAAGACGCACTCACACAGGGAATGGAAAAATTGCACCAGAATCTATCCCTCAGCATTGCCAATGATCCTCTTGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGACTAGAAGCATTGGAGAGCTTTGTAAGCCAGCCGAGCGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAGTGTCTCACATCCTAACCACCAAACAAGCAGCACAAGGCTTGCTCGCTTTAGGCGAGTACTTCCATCGTCTCCGTGTTCTCAGTTCCCTCTGGACCACCCGACCTCGCGAACCCGCCGAGCCATGA 1317 46.17 MAESGRARAALEVYSKKLLAVSAIEINLGTADAWRADRNGYVGGKCTPLCSHFLLLFNLDSVHFTLMISQQSMSSSSTQLYASNMGIYEPFYQINSWGTAYSRPLLSPIIKVDDCVDNKPELIPFESMDHPESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKLKGVHTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVTELRKALQVHVTDMELQILVESSLNHYHNLFCMKANVAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLKPYFGPLNEQQRADIHKLHQSSRQAEDALTQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALESFVSQPSVCYSFLEQADHLRQQTLKRVSHILTTKQAAQGLLALGEYFHRLRVLSSLWTTRPREPAEP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19651845 19655681 + CmaCh04G030050.1 Cma04g03005 294086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g03005 438 Coils Coil 163 190 - -
Cma04g03005 438 PANTHER TRANSCRIPTION FACTOR TGA7 73 435 - -
Cma04g03005 438 SUPERFAMILY Leucine zipper domain 144 181 IPR046347 GO:0003700|GO:0006355
Cma04g03005 438 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 147 162 IPR004827 GO:0003700|GO:0006355
Cma04g03005 438 ProSiteProfiles DOG1 domain profile. 213 431 IPR025422 GO:0006351|GO:0043565
Cma04g03005 438 Gene3D - 143 192 - -
Cma04g03005 438 PANTHER TRANSCRIPTION FACTOR TGA9 73 435 - -
Cma04g03005 438 SMART brlzneu 140 203 IPR004827 GO:0003700|GO:0006355
Cma04g03005 438 Pfam Seed dormancy control 230 305 IPR025422 GO:0006351|GO:0043565
Cma04g03005 438 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 142 186 IPR004827 GO:0003700|GO:0006355
Cma04g03005 438 Pfam bZIP transcription factor 143 182 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00793 Cma-Chr4:4044330 Cma04g03005 Cma-Chr4:19651845 1.11E-88 dispersed
Cma04g03005 Cma-Chr4:19651845 Cma16g00670 Cma-Chr16:3493420 1.71E-120 dispersed
Cma15g00040 Cma-Chr15:223090 Cma04g03005 Cma-Chr4:19651845 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35003 PF14144 DOG1 2.30E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g03005 K14431 - csv:101217648 645.966