Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00003 ATGGCGGGTCGGAGGATATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTTGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGAAAAACTTTTCCTACATTCGATCCAAGGACTGGGGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAAAGATGTTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCTAGGATGACTGCTTATGAAAGATCAAAGATAATTTTGCGGTTTGCTGATTTGGTTGAAAAAAATGCTGAGGAAATTGCAGCACTCGAAACTTGGGACAATGGCAAAACATACGAACAGTCAGCAAAACTGGAAGTCCCAATGTTTGTACGCATCTTTCGATACTACGCCGGTATGTTTGGTTTAATTTTTGGACAACAGGAGTTATCAATCAATGTGTTAATGAGACCTGCATCCGCTACACTTACCTCAGGATGGGCCGATAAGATTCACGGACTCACTGTTCCAGCTGATGGCTCGTATAATGTCCAGACCTTGCACGAACCTATTGGTGTTGCAGGTCAAATCATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGCCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTCTCTATGTGGCCAAGCTGTTGCATGAGGCTGGACTACCTGAGGGCGTTCTGAATATTGTTTCCGGTTATGGACCCACCGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCAACCGAAACAGGGAAAGTAGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCTGTAACATTGGAGCTTGGAGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTTGACAAAGCTGTGGAGATGGCACACTTCGCTCTCTTCTTCAACCAGGGACAATGTTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAAAGTATATGATGAATTTATTGAAAAAGCAAGGAAACGGGCTGTGAACCGCGTTGTTGGTGATCCGTTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGATGGGGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGAATTGAAGGAGGAGCCACCCTTGAAGCTGGAGGAGAGAGGTTCGGTTCCAAGGGCTACTATGTCCAGCCAACAGTTTTCTCAAACGTCAAGGATGACATGAAAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGATCGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCCGCAGGGGTGTTTACTCAAAACATCAACACAGCCAACAGGCTGACGCGTGCTTTGAGAGTCGGCTCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGCGGACATGGGCGAGAAAAGGGCATTTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTTTGGAAAACCCTGCTTGGCTTTAG 1689 46.0 MAGRRISSLLSRSLASSPALLSKGRRPLGGTTTGKYSTSAAVETPITPSVKVNYTQLLINGQFLDSISGKTFPTFDPRTGEVIANVAEGDAKDVDLAVSAARKAFDEGPWPRMTAYERSKIILRFADLVEKNAEEIAALETWDNGKTYEQSAKLEVPMFVRIFRYYAGMFGLIFGQQELSINVLMRPASATLTSGWADKIHGLTVPADGSYNVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLLHEAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFIEKARKRAVNRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMKIAQEEIFGPVQTILKYKEIEEVIRRANASRYGLAAGVFTQNINTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17096 20194 + CmaCh05G000030.1 Cma05g00003 294121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00003 562 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 328 335 IPR029510 GO:0016491
Cma05g00003 562 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 334 523 IPR016163 GO:0016620
Cma05g00003 562 CDD ALDH_F2BC 52 554 - -
Cma05g00003 562 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 193 562 - -
Cma05g00003 562 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 25 175 - -
Cma05g00003 562 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 25 175 - -
Cma05g00003 562 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 193 562 - -
Cma05g00003 562 SUPERFAMILY ALDH-like 50 556 IPR016161 GO:0016491
Cma05g00003 562 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 356 367 IPR016160 GO:0016491
Cma05g00003 562 Pfam Aldehyde dehydrogenase family 68 552 IPR015590 GO:0016491
Cma05g00003 562 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 69 552 IPR016162 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00003 Cma-Chr5:17096 Cma11g00104 Cma-Chr11:552767 0 dispersed
Cma12g00001 Cma-Chr12:1241 Cma05g00003 Cma-Chr5:17096 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00003 K00128 - csv:101202756 957.592