Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00006 ATGGCGAGTCTAGCACCGGGAGTTCTGGTGAAGCTTCTTGATGGAATGCATTCGGGGGTGAAACCCACGAGCGATCACCGGAGCTCGCTGTTGCAGGTGACGGACATTGTGCCGGCGGATCTAGACGAGAAAAACCTGTGGCCGAAGCATGGATTCTATATCAAGGTGTCGGATTCTTCGCACTCAATCTACGTGAGTCTGCCTTCGGATCAAGACGATTTCGTTCTGAGCAACAAAATGCAGCTAGGTCAATTCATTTACGTGGATAAATTGGAACCCGGGTCGCCCGTCCCAGTGGTGAAGGGCGCGAAACCACTCCCCGGGCGACATCCTCTGGTGGGAACGCCAGAACCGCTAATGGGTTTAAGGGAGAAAGGGGAGAAATGTGATGAAAAGTCAAAGGCGGCAAAGACAATGGTGTCAGGTCCGAGGCGGGGTTCTTGGGGAACAGGAACAGGGCTGAGCTTGGGAGATGGGTATTCTTCTTCACCCATGATTCTGAAACCCATTCCGCTGGACTTTGAGCAGTGTACGCCCGTGAAGGAGCGTGCAGCTCCCAGCTCCCTGATGATGTCTCCCATGGTGAGGGGCAAGAACGGAATCCGGTCTTCCTTTGGCGGTGGGCTGTTGGCTAAACTCGAAAGCCCTGTTCCTGCTTCTTCACTGCTTAGGAAAAGCTGTGCTGTTCCCTGTGGATCGATGTCCAAATTCCCTAGAAGCAAGAGCGTGTGCGAGCGAGAACCAAGGATTTCACCACCAACGCCCTTCAACTCAGCTGTAGCGAGGAAGAGCGCGACTCCACCCCCAAGGTTGCGAAATCAAAGGATCCCAGCTGCTTCTGCTTCCTCCCCAATGATTAAGAGTTCTGAGTCTGATGATACCGTCACCACTCTTCCCATGAACTTACCTGGAAAACTCAGTATATTAGGGAAGGAAGCTGTGCAGCAGAGAGATACAGCGCAGAAGAATGCCCTCCAAGCCTTAAGAGGTGCTACTGCCACGGAAGCTTTAGTTAGATCCCTCAGGATGCTTTCTAGGTTGAGTAAATCGGCTAGAGCCGACGCTCCTGCCAACTGTTTCGACAAATTTCTTGAATTCCACCAGCAAATGATGCAGGTAGTGAGTGATATGGTGTCCATTCAAGCCGCTACTGAACTGGCTCAGAACCAGACTTCCAAAAAGCAGCAACAACAGAAGGAACAAGAATCTCCCTCCATACTAAGCGAGATCACACCCAACTCCAATAATCCAGAATCAAGTTTATCCCAAAGAAGGAGTGGGTTGTACAAATCGGTGGCAGCTTGCCCGGAGAGGAGCGAGCAGAAGAAGAGCAACTTTGGGAAGCAGAAAGCAGCAGCATTTGTTGGGAAATTAGGCTTGGGAAGTAGTCGTAGTAGCAGTAGTAGTAGTGGGGAGAATGATGAAAATGAGAAGCCGCCAATGGCAATGGCAATGGCAATGACATCATGGTGTAGGTTGGGCGACACAATCAAACTGGCGAAGCAGATTGAAAGGGAAGCTGGAAAGTGGTTTATGGGGTTCATAGAGAAAGCATTGGAAGCGGGTATGAAGAAGAGCAAGGGAGCGGGAGACGAGGATGTCAGCAAAGTTCCTCAGTCTCTATTACTCAAGCTCATCAACTGGATGGAGGTACAGTGTTGTAACAATAACAAGACGACGGGGGCGGCAGTAGTTCTCCATCCTAGAGCCTCACAAATTGCTCGCAAATTAAGAATCAAGATCAAGAACCCTTGA 1755 50.48 MASLAPGVLVKLLDGMHSGVKPTSDHRSSLLQVTDIVPADLDEKNLWPKHGFYIKVSDSSHSIYVSLPSDQDDFVLSNKMQLGQFIYVDKLEPGSPVPVVKGAKPLPGRHPLVGTPEPLMGLREKGEKCDEKSKAAKTMVSGPRRGSWGTGTGLSLGDGYSSSPMILKPIPLDFEQCTPVKERAAPSSLMMSPMVRGKNGIRSSFGGGLLAKLESPVPASSLLRKSCAVPCGSMSKFPRSKSVCEREPRISPPTPFNSAVARKSATPPPRLRNQRIPAASASSPMIKSSESDDTVTTLPMNLPGKLSILGKEAVQQRDTAQKNALQALRGATATEALVRSLRMLSRLSKSARADAPANCFDKFLEFHQQMMQVVSDMVSIQAATELAQNQTSKKQQQQKEQESPSILSEITPNSNNPESSLSQRRSGLYKSVAACPERSEQKKSNFGKQKAAAFVGKLGLGSSRSSSSSSGENDENEKPPMAMAMAMTSWCRLGDTIKLAKQIEREAGKWFMGFIEKALEAGMKKSKGAGDEDVSKVPQSLLLKLINWMEVQCCNNNKTTGAAVVLHPRASQIARKLRIKIKNP 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26292 28681 - CmaCh05G000060.1 Cma05g00006 294124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00006 584 Pfam Plant protein of unknown function (DUF936) 270 552 IPR010341 -
Cma05g00006 584 Pfam Plant protein of unknown function (DUF936) 4 126 IPR010341 -
Cma05g00006 584 MobiDBLite consensus disorder prediction 459 479 - -
Cma05g00006 584 MobiDBLite consensus disorder prediction 460 475 - -
Cma05g00006 584 PANTHER EXPRESSED PROTEIN 1 584 IPR010341 -
Cma05g00006 584 MobiDBLite consensus disorder prediction 276 294 - -
Cma05g00006 584 PANTHER OS01G0108800 PROTEIN 1 584 - -
Cma05g00006 584 Coils Coil 380 400 - -
Cma05g00006 584 MobiDBLite consensus disorder prediction 389 427 - -
Cma05g00006 584 MobiDBLite consensus disorder prediction 108 131 - -
Cma05g00006 584 MobiDBLite consensus disorder prediction 243 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00006 - - - csv:101212478 868.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00006 Cma-Chr5:26292 Cma05g00959 Cma-Chr5:7757667 1.75E-41 dispersed
Cma12g00004 Cma-Chr12:17655 Cma05g00006 Cma-Chr5:26292 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g722 Blo01g00397 . Bda01g02223 . . Bpe10g00837 . Bma15g00187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00875 . . . . . Bma01g00051 . . . . . Cma05g00006 . Car05g00005 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009038 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00006 Cma_Chr05 FPKM 5.808375 6.505891 0.502605 0.546689 23.048119 21.825216 19.416433 1.523465 1.524266 1.303917