Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00009 ATGCATACATTACCCGCGCCCCTTCTGGTTCTCCTCTATCTCTTTATCTTCTTGCTTTCACCGCTCAATGTTCCCGCGGCCGCCGACGAGGACAACCCCTTCACCCCAAAAGCTTTTCTGAATCGTTATTGGAACAAGGAGGTGCGGAATGATATGCCAAAACCCACTTTTCTCTTCTCCAAGGTCTCTCCCTTGACGGCAGTGCAGTCGGCGGCCTTCGCCAAACTTGCAGCTCAAAATGCTCTCTCCTCCCGACTCCCCGAGTTCTGCTCCGCCGCTAACTTGCTTTGCTTTCCTGATTTATCCCCCTCTTTGGCCAAGCACGACAGCACCTCCAACTTTGCCGTGTATTCCAATAAGAACTTCACCACTTACGGCACCCAAAGATCTGGTGGAATCGACTCCTTCAAAAACTATTCCAATGGTGACAATGTGGTCGTCGATTCCTTCAGGCGCTATAGCCACGAGGCCCTGGGCCACACCGATCAATTTTCCACTTATGGCACTGATACCAACGTCCCCGACCAGAGCTTTAACACTTATGCCTCCAAAGCCGTCGGAGGCAACGGCGGGTTCACAACCTACGAACAATCCGTCAATGTCCCCAATCTCCGGTTCACCACCTACTCCAGTGATGCCACTGGAAGATCTCAATCCTTCAAGAGCTACAGCGAGAACGCAAACGCCGGAGATCAGTCGTTTGTCAACTATGGGAAACGGGGAAATGGGGGTCCGAACGAGTTCACTGGCTACGGGACCAACGCAAACGTAATAGGCTCAGGGTTTTCAAGCTACGGGGCAAACGGAAATGGTGCTAACGACACATTCACCAATTACGGCAACGAGCAGAACAACCCACAGAATAACTTCAGGAGCTATGGCGACGGTGGGAATGGAGCGATTGAAAGCTTCTCTAGTTACAGGGACCAGGCCAATGTGGGGGACGATTCATTCCAGTCCTACTCCAAAAACTCCAACTCTGCCAAGGTTAATTTCGCAAATTATGGGAAATCCTTCAACGAGGGTACGGACAAATTTAGTGGCTATGGTCAGAATGGGAATGGGCAAAGCGTGGGGTTCAAGACGTATGGGGTGAATACGACGTTCAAGGATTACGCAAAACAGGGAATTAGTTTTGCCAAGTACAGCAATGTGAGCTCTGGGGGCGCGAAAATGTCGGTGAGCGAAAGTTTGGCGAAGAGGTGGGTAGAGCCCGGGAAGTTCTTCCGGGAGTCGATGTTGAGGAAGGGGACGGTGGTGGCGATGCCGGACATCAGAGATAAAATGCCGAAGAGGTCGTTCTTGCCCCGATCTATTCTGTCCAAGCTACCCTTCTCGAGTTCGAAGCTGGAGGTGATGAAGCAGATATTCCACGCGGGGGATAACTCGTCGATGGAGACTATGATGACGGAGACGCTTAGGGACTGCGAGAGGACGCCCAGCGCCGGGGAGACGAAGCGGTGCGTGGGTTCGGTGGAGGATATGATAGACTTCGCGACGTCGGTGCTGGGGCGGAACGTGGTGGTCCGGACGACGGAGAACACGAAGGGGTCGAAGGGGAACATAATGATTGGGGCAGTGAAAGGGATTGAGGGAGGGAAGGTGACGGAGTCTGTGTCTTGCCACCAGAGCCTGTTCCCTTACCTCCTCTACTACTGCCACTCCGTGCCCAAAGTTCGGGTGTACGAGGCGGAGTTGCTGGATCCAACCTCCAAAGCCATCATCAACCACGGAGTTGCCATCTGTCACCTGGACACCTCGGCCTGGAGTCCCGCTCACGGGGCCTTCATAGCTCTCGGATCCGCCCCCGGTCGGGTGGAGGTGTGCCACTGGATCTTCGAGAATGACATGACGTGGAGTGTGGCGGACTGA 1872 53.85 MHTLPAPLLVLLYLFIFLLSPLNVPAAADEDNPFTPKAFLNRYWNKEVRNDMPKPTFLFSKVSPLTAVQSAAFAKLAAQNALSSRLPEFCSAANLLCFPDLSPSLAKHDSTSNFAVYSNKNFTTYGTQRSGGIDSFKNYSNGDNVVVDSFRRYSHEALGHTDQFSTYGTDTNVPDQSFNTYASKAVGGNGGFTTYEQSVNVPNLRFTTYSSDATGRSQSFKSYSENANAGDQSFVNYGKRGNGGPNEFTGYGTNANVIGSGFSSYGANGNGANDTFTNYGNEQNNPQNNFRSYGDGGNGAIESFSSYRDQANVGDDSFQSYSKNSNSAKVNFANYGKSFNEGTDKFSGYGQNGNGQSVGFKTYGVNTTFKDYAKQGISFAKYSNVSSGGAKMSVSESLAKRWVEPGKFFRESMLRKGTVVAMPDIRDKMPKRSFLPRSILSKLPFSSSKLEVMKQIFHAGDNSSMETMMTETLRDCERTPSAGETKRCVGSVEDMIDFATSVLGRNVVVRTTENTKGSKGNIMIGAVKGIEGGKVTESVSCHQSLFPYLLYYCHSVPKVRVYEAELLDPTSKAIINHGVAICHLDTSAWSPAHGAFIALGSAPGRVEVCHWIFENDMTWSVAD 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33748 36119 - CmaCh05G000090.1 Cma05g00009 294127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00009 623 MobiDBLite consensus disorder prediction 274 294 - -
Cma05g00009 623 SMART BURP_2 406 622 IPR004873 -
Cma05g00009 623 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 14 623 - -
Cma05g00009 623 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 14 623 - -
Cma05g00009 623 MobiDBLite consensus disorder prediction 274 295 - -
Cma05g00009 623 Pfam BURP domain 408 619 IPR004873 -
Cma05g00009 623 ProSiteProfiles BURP domain profile. 408 622 IPR004873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00009 - - - csv:101211346 1149.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00009 Cma-Chr5:33748 Cma09g00548 Cma-Chr9:2476458 7.16E-32 dispersed
Cma10g00130 Cma-Chr10:591156 Cma05g00009 Cma-Chr5:33748 0 transposed
Cma12g00005 Cma-Chr12:20824 Cma05g00009 Cma-Chr5:33748 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g715 . Blo16g01158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0640 . . . . . . . . . . . Bma06g00623 . . . . Cma05g00009 . Car05g00007 . Cpe07g00689 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005778 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 3 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00009 Cma_Chr05 FPKM 28.796169 31.930729 7.02926 5.895022 71.538017 71.715744 69.765816 0.517204 0.275953 0.235295