Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00011 ATGCTCCCTACTTTCTTCCCCATTTGCTTTGCACTGCATCATCATCCAGCCAACTCCAAGGCCATGAACAGTGGTTCGCAAGAAATGAGAACTCGAAGGCAGCATCCTGTTACTCAGAATTCCCCATCACTGGCAATCTCCTGTACAACAAAATTGCCTCAAGATGTACAAATTTCGCCAATTACTGGGGATGACGAGCGTGGAGACTTCAACTCCAATAATGACTCATCTGCATCTGGACTTCTCAAAACTTTACATATATCAACAAGACTAATGGATGATTTTCTCGCACTTTCAAAGAGTAACACGGAGAAAGATCTTGAGACCTGTGGGATTCTTGGAGCCCATTTAGAGGAAGAAACCTTCTATGTGACTACGCTTGTCATACCAAAACAGGAATCGACTTCCAATTCTTGCCAAGCTATAAACGAGGAAGAAGTCTACGCAATTCATAGCGAACGATCCCTTTGTCCAGTTGGATGGATTCATACGCATCCTTCACAGAGTTGTTTCATGTCTTCAATAGATCTGCACACTCACTATCCATATCAGGTAATGGTGCCTGAGGCTTTCGCCATTGTCGTTGCTCCAACAGATGCATCAAGGAGCTTTGGAATATTTCGACTAAGTGATCCTGGTGGGATGAAGATCCTGAGAGAGTGTCAAGAGGATGGTTTTCACACTCACAAAGATCCAGAAGATGGCAGCCCCATTTACGAGCTCTGCTCTAATGTCTACCAAAATTCCAACTTGAGATTTGAAATCATTGACTTGCGATCATGA 783 43.55 MLPTFFPICFALHHHPANSKAMNSGSQEMRTRRQHPVTQNSPSLAISCTTKLPQDVQISPITGDDERGDFNSNNDSSASGLLKTLHISTRLMDDFLALSKSNTEKDLETCGILGAHLEEETFYVTTLVIPKQESTSNSCQAINEEEVYAIHSERSLCPVGWIHTHPSQSCFMSSIDLHTHYPYQVMVPEAFAIVVAPTDASRSFGIFRLSDPGGMKILRECQEDGFHTHKDPEDGSPIYELCSNVYQNSNLRFEIIDLRS 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44166 48743 + CmaCh05G000110.1 Cma05g00011 294129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00011 260 ProSiteProfiles MPN domain profile. 85 215 IPR037518 -
Cma05g00011 260 PANTHER AMSH-LIKE PROTEASE 20 259 - -
Cma05g00011 260 MobiDBLite consensus disorder prediction 17 41 - -
Cma05g00011 260 Gene3D Cytidine Deaminase, domain 2 63 260 - -
Cma05g00011 260 CDD MPN_AMSH_like 82 259 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cma05g00011 260 PANTHER FI19924P1 20 259 - -
Cma05g00011 260 SUPERFAMILY JAB1/MPN domain 83 215 - -
Cma05g00011 260 MobiDBLite consensus disorder prediction 19 41 - -
Cma05g00011 260 SMART pad1_6 84 212 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma05g00011 260 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 83 188 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00011 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - qsu:112028628 331.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00011 Cma-Chr5:44166 Cma08g01262 Cma-Chr8:7683178 1.15E-82 dispersed
Cma05g00011 Cma-Chr5:44166 Cma13g01020 Cma-Chr13:7821116 5.97E-85 transposed
Cma05g00011 Cma-Chr5:44166 Cma18g00045 Cma-Chr18:181474 7.90E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0643 . . . . . . . . . . . . . . . . Cma05g00011 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015210 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 1 1 0 1 0 0 1 13
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00011 Cma_Chr05 FPKM 4.583095 4.987803 9.394651 10.983627 10.117441 9.734386 9.797622 12.05722 11.348527 11.787207