Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00013 ATGGGAGACCCAACAATTTTGGATAGAATGCTTATTCACCTTCGTGCGACATGCAAATACTATACTGGTTTCCCAAAAGATCTTGGGCCTTCAAGGGTCATACATTTTACATCTGAACGTGAGTTTGTCCAGCTCCTTCATGAAGGTTATCCAGTCGTTGTTGCTTTTACAGTCAGAGGTAATTACACAAAGCATCTTGACAAAGTATTGGAGGAAGCTGCGGTTGAGTTTTATCCGACTGTGAAATTTATGCGTGTTGAGTGCCCAAAGTATCCTGGTTTCTGCATTTCACGGCAGAGAAAGGAATATCCATTTATCGAGATGTTTCATAGCCCACAACAAGCATCTAGCCAGGGAAAGATTTCTGATCCTAACATTACGAAGTACTCGGTGAAGGTTCTACCCGTGTTTAATCTTTATGCCCACATGAAAAGTAGACTCATACAAGATACTTCCTGGTTTTTTGCCAGTCAGGTTACATTCACTCCCTTAAGTAGTATTATGGTATCCGAAATCTTATCATTGCAAACTTTGAAGGGCCATCTTCAGAACATTTCATTTGCCTCTCTTCAGTATGAAATTATTTATTTGAAGTCAGTGGATTGTGACTCAGGTTCGGGGCCTTTTAGTACATGTTTCTTAGTTATAAAAGTACGGGTTAACAATAAAAAAATTTACACAATCTTTTCCCATTTTTATATATTTTTAATAAAAGAACTATTAATTCAAAGAATTTTTATAATTATGGACTGGGCCCTCGTTAGGAAATTTTTGTTCGTGGGCCGGCCCAACTTGAATCATATAAAACTAAGATTTGAATTGGAAGCCGTGGTGCATGTTTTATTTACGGGAGCGCGGGAGTGGGTTTTATCTCCTCTCAAAGCTGCAACCATGGAATTTGCTTCTCTTCAAGACCTCTGCCTACTACTAATTTCTTCGGCAATACGGAGATGCATCTGCTCCGAACGACTTTGCAGACTCTCAGTTCTTCTGCAACGCTCTCCCGCTTCCGATCCTCCACTAGTTCGTATTTCTATTTCAGATACCGGCCTTGGAAGCTGCATAGAGGAGTTTCAGAATTTGAAGTGCCCCGTTGAAGGTATCCTTGCCGAAACATGGAACGGAATTGTTTATGTGAGAACTACAAAGATTGCAGATATTTGTGATAAAGAGATAAGTTGTTATCAGTTGAATCTGAAAGAGAATGTCACTACCAGGAAGCCAATTCTGCTACCTTCGAACATTAAGCATGGTGTGAAATTCAGGCATGGAACCATTTTAACTTTTTGTGGAACCGAAGTGTGTTTGTCTGTTTCTGAAAGTATTGATGTTTTGCTGGAGGAGTTCAACTGCTTCTTTCAGAAGTCGCATTTCTTACCTGAGTTCATCCTCCTTTATTTTGCAGATTCTCGTTCTAAAGGTCCCACTTTTCAATTTCACAAGAATATTGCAATGGAAGTTATGGCCGACGGCCAGGATGTCCCAGGGTCACGTAATGATGCTGTTTTCCTGGAAAAATTTTCCCCTAGTTCCTCTTTTGCAGCTTCAACTCTTGATCATTTGAAATTTGGCCTTGAGAGTTATGTATTACGGCATGGATCCAGTTTGGCCTGTGACTCTTGTTTCCCTAACAGGGATAATCTGAGGAGTGGGGGTGGAATGGTTTGTGAAGACAAGCATAAAACTACCAAACTGGTAGTGGAGGCAGCGGTTGTGACTACTGAAATATCAAACCCGACCAATAATTGCTTTAGAGCAGGATGCTCTAATACGAAGGTTCTCTGTTTTAAAGATTTTGCGCCTTGTTCAATCTCCGAGGCACTTCTGAAGGCATTAACAGGCATTGACTGGAAACGTTATGGATTGGCTTTGGAATGTGCTATCGATCAAAGAAGTCATGCACTATTAAAGTGGGAACACATGCCCCTATCTTTTCATATTCATATTGTTGTCCACTGCTATGATAAGCATGTGTTCGAGGCCATGCCATTGTTGCAGAAGACACGGTTTGATAAAAAACTCATAAGAAAAGCAGTTAAACTTGCACTGGACGACTTCAAGAATAAACATGCGGGAGTTCTTCTCAGTGCCGATACCCTCAAGGTCTCAGCATGTTCTCGTAGGAATCAAGAGCAGCTTCTTAAACTTGCTTCCATTTTTCATCTTCAGATCAGTAAGTTTGCCCCTGATCTTGCCAAATCAATTGCTGGCCTAGTTTTATACTCCAGTGACATGGATTTCAAAGAAGAATGCCTTGCAATTCTTGGCTTGCAACCTCATCAATCAGAAGGTGAAATTGTTGGAGAAAATATAAAGAATAAGATCATTTCAGCCATAGAGGTGAATGACCGAAGGCAACAAGGAACTAAAGAAGTTGCCCCTCTTCTGTTTGAAGGGCGCCACGAACTACAGTTTGTGGACGATGAATGTGATGAAGATGGTCTTGATCCAATGGAT 2457 40.78 MGDPTILDRMLIHLRATCKYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAVEFYPTVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQASSQGKISDPNITKYSVKVLPVFNLYAHMKSRLIQDTSWFFASQVTFTPLSSIMVSEILSLQTLKGHLQNISFASLQYEIIYLKSVDCDSGSGPFSTCFLVIKVRVNNKKIYTIFSHFYIFLIKELLIQRIFIIMDWALVRKFLFVGRPNLNHIKLRFELEAVVHVLFTGAREWVLSPLKAATMEFASLQDLCLLLISSAIRRCICSERLCRLSVLLQRSPASDPPLVRISISDTGLGSCIEEFQNLKCPVEGILAETWNGIVYVRTTKIADICDKEISCYQLNLKENVTTRKPILLPSNIKHGVKFRHGTILTFCGTEVCLSVSESIDVLLEEFNCFFQKSHFLPEFILLYFADSRSKGPTFQFHKNIAMEVMADGQDVPGSRNDAVFLEKFSPSSSFAASTLDHLKFGLESYVLRHGSSLACDSCFPNRDNLRSGGGMVCEDKHKTTKLVVEAAVVTTEISNPTNNCFRAGCSNTKVLCFKDFAPCSISEALLKALTGIDWKRYGLALECAIDQRSHALLKWEHMPLSFHIHIVVHCYDKHVFEAMPLLQKTRFDKKLIRKAVKLALDDFKNKHAGVLLSADTLKVSACSRRNQEQLLKLASIFHLQISKFAPDLAKSIAGLVLYSSDMDFKEECLAILGLQPHQSEGEIVGENIKNKIISAIEVNDRRQQGTKEVAPLLFEGRHELQFVDDECDEDGLDPMD 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 50792 60541 + CmaCh05G000130.1 Cma05g00013 294131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00013 819 SUPERFAMILY Thioredoxin-like 23 141 IPR036249 -
Cma05g00013 819 PANTHER TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B-LIKE 718 812 IPR034566 GO:0042138
Cma05g00013 819 PANTHER TYPE 2 DNA TOPOISOMERASE 6 SUBUNIT B-LIKE 302 703 IPR034566 GO:0042138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00013 - - - cmo:103487691 684.485
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g683 . . . Bda11g01268 Bpe13g01465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01268 . . . Bma06g00619 . . . . Cma05g00013 . Car05g00012 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004565 1 3 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00013 Cma_Chr05 FPKM 4.494913 4.489319 6.017417 5.869359 10.505436 9.280811 11.494409 6.386737 6.386676 7.697425